Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 3 | NC_000003.12:g.147995192C>A |
GRCh37.p13 chr 3 | NC_000003.11:g.147712979C>A |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.331 | A=0.669 |
1000Genomes | American | Sub | 694 | C=0.330 | A=0.670 |
1000Genomes | East Asian | Sub | 1008 | C=0.167 | A=0.833 |
1000Genomes | Europe | Sub | 1006 | C=0.419 | A=0.581 |
1000Genomes | Global | Study-wide | 5008 | C=0.312 | A=0.688 |
1000Genomes | South Asian | Sub | 978 | C=0.320 | A=0.680 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.530 | A=0.470 |
The Genome Aggregation Database | African | Sub | 8686 | C=0.363 | A=0.637 |
The Genome Aggregation Database | American | Sub | 832 | C=0.370 | A=0.630 |
The Genome Aggregation Database | East Asian | Sub | 1606 | C=0.164 | A=0.836 |
The Genome Aggregation Database | Europe | Sub | 18432 | C=0.453 | A=0.546 |
The Genome Aggregation Database | Global | Study-wide | 29858 | C=0.409 | A=0.590 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.490 | A=0.510 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.419 | A=0.580 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.498 | A=0.502 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs2061668 | 0.000016 | alcohol dependence(early age of onset) | 20201924 |
rs2061668 | 0.0000164 | alcoholism | pha002892 |
rs2061668 | 0.0000339 | alcoholism | pha002893 |
rs2061668 | 0.000034 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr3 | 147664853 | 147664933 | E067 | -48046 |
chr3 | 147679922 | 147680133 | E067 | -32846 |
chr3 | 147680311 | 147680376 | E067 | -32603 |
chr3 | 147680394 | 147680486 | E067 | -32493 |
chr3 | 147722292 | 147722384 | E067 | 9313 |
chr3 | 147723440 | 147723546 | E068 | 10461 |
chr3 | 147669197 | 147669327 | E069 | -43652 |
chr3 | 147679922 | 147680133 | E069 | -32846 |
chr3 | 147680311 | 147680376 | E069 | -32603 |
chr3 | 147680394 | 147680486 | E069 | -32493 |
chr3 | 147680691 | 147680844 | E069 | -32135 |
chr3 | 147664853 | 147664933 | E071 | -48046 |
chr3 | 147679922 | 147680133 | E071 | -32846 |
chr3 | 147680311 | 147680376 | E071 | -32603 |
chr3 | 147680394 | 147680486 | E071 | -32493 |
chr3 | 147680691 | 147680844 | E071 | -32135 |
chr3 | 147664853 | 147664933 | E072 | -48046 |
chr3 | 147664853 | 147664933 | E074 | -48046 |
chr3 | 147680691 | 147680844 | E074 | -32135 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr3 | 147663698 | 147664368 | E067 | -48611 |
chr3 | 147663698 | 147664368 | E068 | -48611 |
chr3 | 147663698 | 147664368 | E069 | -48611 |
chr3 | 147663698 | 147664368 | E071 | -48611 |
chr3 | 147663698 | 147664368 | E072 | -48611 |
chr3 | 147663698 | 147664368 | E073 | -48611 |
chr3 | 147663698 | 147664368 | E074 | -48611 |