rs2062832

Homo sapiens
T>C
FGF12 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T==0229 (6875/29928,GnomAD)
T==0199 (5796/29118,TOPMED)
T==0210 (1053/5008,1000G)
T==0307 (1182/3854,ALSPAC)
T==0291 (1079/3708,TWINSUK)
chr3:192623262 (GRCh38.p7) (3q29)
AD
GWASdb2
1   publication(s)
See rs on genome
5 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.192623262T>C
GRCh37.p13 chr 3NC_000003.11:g.192341051T>C

Gene: FGF12, fibroblast growth factor 12(minus strand)

Molecule type Change Amino acid[Codon] SO Term
FGF12 transcript variant 2NM_004113.5:c.N/AIntron Variant
FGF12 transcript variant 1NM_021032.4:c.N/AGenic Upstream Transcript Variant
FGF12 transcript variant X3XM_017005879.1:c.N/AIntron Variant
FGF12 transcript variant X1XM_005247227.2:c.N/AGenic Upstream Transcript Variant
FGF12 transcript variant X2XM_006713538.3:c.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.014C=0.986
1000GenomesAmericanSub694T=0.220C=0.780
1000GenomesEast AsianSub1008T=0.246C=0.754
1000GenomesEuropeSub1006T=0.326C=0.674
1000GenomesGlobalStudy-wide5008T=0.210C=0.790
1000GenomesSouth AsianSub978T=0.310C=0.690
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.307C=0.693
The Genome Aggregation DatabaseAfricanSub8724T=0.058C=0.942
The Genome Aggregation DatabaseAmericanSub838T=0.270C=0.730
The Genome Aggregation DatabaseEast AsianSub1602T=0.258C=0.742
The Genome Aggregation DatabaseEuropeSub18462T=0.304C=0.695
The Genome Aggregation DatabaseGlobalStudy-wide29928T=0.229C=0.770
The Genome Aggregation DatabaseOtherSub302T=0.330C=0.670
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.199C=0.800
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.291C=0.709
PMID Title Author Journal
22072270Genome-wide association study identifies 5q21 and 9p24.1 (KDM4C) loci associated with alcohol withdrawal symptoms.Wang KSJ Neural Transm (Vienna)

P-Value

SNP ID p-value Traits Study
rs20628325.92E-05alcohol withdrawal symptoms22072270

eQTL of rs2062832 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2062832 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3192326940192327344E067-13707
chr3192295684192295734E081-45317
chr3192295776192295911E081-45140
chr3192326940192327344E081-13707
chr3192338138192338362E081-2689