| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 3 | NC_000003.12:g.30290858A>G |
| GRCh37.p13 chr 3 | NC_000003.11:g.30332349A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.213 | G=0.787 |
| 1000Genomes | American | Sub | 694 | A=0.450 | G=0.550 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.423 | G=0.577 |
| 1000Genomes | Europe | Sub | 1006 | A=0.569 | G=0.431 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.411 | G=0.589 |
| 1000Genomes | South Asian | Sub | 978 | A=0.470 | G=0.530 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.574 | G=0.426 |
| The Genome Aggregation Database | African | Sub | 8690 | A=0.265 | G=0.735 |
| The Genome Aggregation Database | American | Sub | 836 | A=0.390 | G=0.610 |
| The Genome Aggregation Database | East Asian | Sub | 1606 | A=0.408 | G=0.592 |
| The Genome Aggregation Database | Europe | Sub | 18394 | A=0.542 | G=0.457 |
| The Genome Aggregation Database | Global | Study-wide | 29828 | A=0.451 | G=0.549 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.600 | G=0.400 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.418 | G=0.581 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.553 | G=0.447 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs2077164 | 0.000386 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr3 | 30327356 | 30328110 | E068 | -4239 |
| chr3 | 30327356 | 30328110 | E070 | -4239 |
| chr3 | 30327356 | 30328110 | E072 | -4239 |
| chr3 | 30327356 | 30328110 | E073 | -4239 |
| chr3 | 30323096 | 30323315 | E081 | -9034 |
| chr3 | 30323625 | 30323742 | E081 | -8607 |
| chr3 | 30323780 | 30324226 | E081 | -8123 |
| chr3 | 30324251 | 30324483 | E081 | -7866 |
| chr3 | 30353433 | 30353548 | E081 | 21084 |
| chr3 | 30323625 | 30323742 | E082 | -8607 |
| chr3 | 30323780 | 30324226 | E082 | -8123 |
| chr3 | 30327356 | 30328110 | E082 | -4239 |