SNP Detail Info-rs2082622

Sequence Name	Change(s)
GRCh38.p7 chr 2	NC_000002.12:g.205039410C>G
GRCh37.p13 chr 2	NC_000002.11:g.205904133C>G

Molecule type	Change	Amino acid[Codon]	SO Term
PARD3B transcript variant 1	NM_001302769.1:c.	N/A	Intron Variant
PARD3B transcript variant 3	NM_057177.6:c.	N/A	Intron Variant
PARD3B transcript variant 2	NM_152526.5:c.	N/A	Intron Variant
PARD3B transcript variant 4	NM_205863.3:c.	N/A	Intron Variant
PARD3B transcript variant X1	XM_011510552.2:c.	N/A	Intron Variant
PARD3B transcript variant X13	XM_011510553.2:c.	N/A	Intron Variant
PARD3B transcript variant X2	XM_017003283.1:c.	N/A	Intron Variant
PARD3B transcript variant X3	XM_017003284.1:c.	N/A	Intron Variant
PARD3B transcript variant X4	XM_017003285.1:c.	N/A	Intron Variant
PARD3B transcript variant X5	XM_017003286.1:c.	N/A	Intron Variant
PARD3B transcript variant X6	XM_017003287.1:c.	N/A	Intron Variant
PARD3B transcript variant X7	XM_017003288.1:c.	N/A	Intron Variant
PARD3B transcript variant X9	XM_017003290.1:c.	N/A	Intron Variant
PARD3B transcript variant X10	XM_017003291.1:c.	N/A	Intron Variant
PARD3B transcript variant X11	XM_017003292.1:c.	N/A	Intron Variant
PARD3B transcript variant X14	XM_017003294.1:c.	N/A	Intron Variant
PARD3B transcript variant X8	XM_017003289.1:c.	N/A	Genic Upstream Transcript Variant
PARD3B transcript variant X12	XM_017003293.1:c.	N/A	Genic Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.974	G=0.026
1000Genomes	American	Sub	694	C=0.840	G=0.160
1000Genomes	East Asian	Sub	1008	C=0.631	G=0.369
1000Genomes	Europe	Sub	1006	C=0.795	G=0.205
1000Genomes	Global	Study-wide	5008	C=0.832	G=0.168
1000Genomes	South Asian	Sub	978	C=0.880	G=0.120
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.755	G=0.245
The Genome Aggregation Database	African	Sub	8726	C=0.941	G=0.059
The Genome Aggregation Database	American	Sub	834	C=0.840	G=0.160
The Genome Aggregation Database	East Asian	Sub	1604	C=0.619	G=0.381
The Genome Aggregation Database	Europe	Sub	18446	C=0.777	G=0.222
The Genome Aggregation Database	Global	Study-wide	29912	C=0.819	G=0.180
The Genome Aggregation Database	Other	Sub	302	C=0.860	G=0.140
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.830	G=0.169
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.767	G=0.233

PMID	Title	Author	Journal
19268276	Genome-wide association study of smoking initiation and current smoking.	Vink JM	Am J Hum Genet

SNP ID	p-value	Traits	Study
rs2082622	0.000489	nicotine smoking	19268276

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr2	205882688	205882879	E067	-21254
chr2	205888314	205888384	E067	-15749
chr2	205890482	205890571	E067	-13562
chr2	205890656	205890814	E067	-13319
chr2	205877605	205877729	E068	-26404
chr2	205882688	205882879	E068	-21254
chr2	205890656	205890814	E068	-13319
chr2	205951054	205951247	E068	46921
chr2	205951534	205951604	E068	47401
chr2	205888314	205888384	E069	-15749
chr2	205890656	205890814	E069	-13319
chr2	205908064	205908456	E069	3931
chr2	205887007	205887086	E071	-17047
chr2	205888314	205888384	E071	-15749
chr2	205951054	205951247	E071	46921
chr2	205951534	205951604	E071	47401
chr2	205882688	205882879	E072	-21254
chr2	205887562	205888110	E072	-16023
chr2	205890656	205890814	E072	-13319
chr2	205890341	205890404	E073	-13729
chr2	205890482	205890571	E073	-13562
chr2	205875003	205875069	E074	-29064
chr2	205882688	205882879	E074	-21254
chr2	205888314	205888384	E074	-15749
chr2	205898809	205898869	E074	-5264
chr2	205898887	205899042	E074	-5091
chr2	205908064	205908456	E074	3931
chr2	205951054	205951247	E074	46921
chr2	205951534	205951604	E074	47401
chr2	205890341	205890404	E081	-13729
chr2	205890482	205890571	E081	-13562
chr2	205887562	205888110	E082	-16023

rs2082622