rs2086106

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0135 (4049/29936,GnomAD)
T==0151 (4407/29118,TOPMED)
T==0125 (628/5008,1000G)
T==0091 (349/3854,ALSPAC)
T==0085 (317/3708,TWINSUK)
chr9:93382067 (GRCh38.p7) (9q22.31)
AD
GWASdb2
1   publication(s)
See rs on genome
2 Enhancers around
16 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.93382067T>C
GRCh37.p13 chr 9NC_000009.11:g.96144349T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.262C=0.738
1000GenomesAmericanSub694T=0.070C=0.930
1000GenomesEast AsianSub1008T=0.080C=0.920
1000GenomesEuropeSub1006T=0.092C=0.908
1000GenomesGlobalStudy-wide5008T=0.125C=0.875
1000GenomesSouth AsianSub978T=0.060C=0.940
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.091C=0.909
The Genome Aggregation DatabaseAfricanSub8706T=0.240C=0.760
The Genome Aggregation DatabaseAmericanSub838T=0.050C=0.950
The Genome Aggregation DatabaseEast AsianSub1620T=0.057C=0.943
The Genome Aggregation DatabaseEuropeSub18470T=0.096C=0.903
The Genome Aggregation DatabaseGlobalStudy-wide29936T=0.135C=0.864
The Genome Aggregation DatabaseOtherSub302T=0.160C=0.840
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.151C=0.848
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.085C=0.915
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs20861060.000816alcohol dependence21314694

eQTL of rs2086106 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2086106 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr99618521296185529E07340863
chr99618521296185529E08240863


Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr99610805996109178E067-35171
chr99610805996109178E068-35171
chr99610782696107916E069-36433
chr99610782696107916E070-36433
chr99610805996109178E070-35171
chr99610782696107916E071-36433
chr99610805996109178E071-35171
chr99610782696107916E072-36433
chr99610805996109178E072-35171
chr99610758296107680E073-36669
chr99610782696107916E073-36433
chr99610805996109178E073-35171
chr99610805996109178E074-35171
chr99610782696107916E082-36433
chr99610805996109178E082-35171
chr99610920796109338E082-35011