SNP Detail Info-rs2087111

Molecule type	Change	Amino acid[Codon]	SO Term
ZGRF1 transcript variant 1	NM_018392.4:c.	N/A	Intron Variant
ZGRF1 transcript variant X1	XM_005263115.3:c.	N/A	Intron Variant
ZGRF1 transcript variant X2	XM_011532091.2:c.	N/A	Intron Variant
ZGRF1 transcript variant X3	XM_011532092.2:c.	N/A	Intron Variant
ZGRF1 transcript variant X5	XM_011532093.2:c.	N/A	Intron Variant
ZGRF1 transcript variant X6	XM_011532094.2:c.	N/A	Intron Variant
ZGRF1 transcript variant X11	XM_011532096.2:c.	N/A	Intron Variant
ZGRF1 transcript variant X4	XM_017008369.1:c.	N/A	Intron Variant
ZGRF1 transcript variant X5	XM_017008370.1:c.	N/A	Intron Variant
ZGRF1 transcript variant X7	XM_017008371.1:c.	N/A	Intron Variant
ZGRF1 transcript variant X15	XM_017008372.1:c.	N/A	Intron Variant
ZGRF1 transcript variant X16	XM_017008373.1:c.	N/A	Intron Variant
ZGRF1 transcript variant X12	XM_011532097.2:c.	N/A	Genic Upstream Transcript Variant
ZGRF1 transcript variant X13	XM_011532098.2:c.	N/A	Genic Upstream Transcript Variant
ZGRF1 transcript variant X14	XM_011532099.2:c.	N/A	Genic Upstream Transcript Variant
ZGRF1 transcript variant X10	XR_001741282.1:n.	N/A	Intron Variant
ZGRF1 transcript variant X8	XR_938763.1:n.	N/A	Intron Variant
ZGRF1 transcript variant X9	XR_938764.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.386	G=0.614
1000Genomes	American	Sub	694	A=0.260	G=0.740
1000Genomes	East Asian	Sub	1008	A=0.059	G=0.941
1000Genomes	Europe	Sub	1006	A=0.437	G=0.563
1000Genomes	Global	Study-wide	5008	A=0.277	G=0.723
1000Genomes	South Asian	Sub	978	A=0.200	G=0.800
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.435	G=0.565
The Genome Aggregation Database	African	Sub	8718	A=0.391	G=0.609
The Genome Aggregation Database	American	Sub	836	A=0.260	G=0.740
The Genome Aggregation Database	East Asian	Sub	1616	A=0.050	G=0.950
The Genome Aggregation Database	Europe	Sub	18442	A=0.458	G=0.541
The Genome Aggregation Database	Global	Study-wide	29914	A=0.411	G=0.588
The Genome Aggregation Database	Other	Sub	302	A=0.470	G=0.530
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.395	G=0.604
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.417	G=0.583

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs2087111	0.000836	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr4:113536080	LARP7	ENSG00000174720.11	A>G	2.1704e-3	-22066	Cerebellar_Hemisphere

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr4	56905086	56905186	E070	4448
chr4	56920849	56920899	E070	20211
chr4	56921044	56921140	E070	20406
chr4	56922287	56922376	E070	21649
chr4	56923446	56923492	E070	22808
chr4	56924911	56924971	E070	24273
chr4	56934104	56934234	E070	33466
chr4	56934407	56934486	E070	33769
chr4	56949116	56949260	E070	48478
chr4	56905086	56905186	E071	4448
chr4	56905086	56905186	E074	4448
chr4	56918861	56919356	E081	18223
chr4	56920849	56920899	E081	20211
chr4	56921044	56921140	E081	20406
chr4	56921171	56921274	E081	20533
chr4	56921343	56921789	E081	20705
chr4	56921895	56922050	E081	21257
chr4	56928807	56929256	E081	28169
chr4	56929401	56929979	E081	28763
chr4	56930213	56930297	E081	29575
chr4	56920849	56920899	E082	20211
chr4	56921895	56922050	E082	21257
chr4	56922287	56922376	E082	21649
chr4	56924911	56924971	E082	24273
chr4	56928807	56929256	E082	28169
chr4	56929401	56929979	E082	28763

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr4	56914540	56916546	E067	13902
chr4	56914540	56916546	E068	13902
chr4	56914540	56916546	E069	13902
chr4	56914540	56916546	E070	13902
chr4	56916893	56917009	E070	16255
chr4	56917016	56917145	E070	16378
chr4	56914540	56916546	E071	13902
chr4	56914540	56916546	E072	13902
chr4	56914540	56916546	E073	13902
chr4	56914540	56916546	E074	13902
chr4	56916893	56917009	E074	16255
chr4	56917016	56917145	E074	16378
chr4	56914540	56916546	E081	13902
chr4	56916893	56917009	E081	16255
chr4	56917016	56917145	E081	16378
chr4	56914540	56916546	E082	13902
chr4	56916893	56917009	E082	16255
chr4	56917016	56917145	E082	16378

rs2087111