rs2102010

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
A==0297 (8909/29902,GnomAD)
A==0394 (11490/29118,TOPMED)
A==0280 (1403/5008,1000G)
A==0224 (862/3854,ALSPAC)
A==0220 (815/3708,TWINSUK)
chr4:53877079 (GRCh38.p7) (4q12)
ND
GWASdb2
1   publication(s)
See rs on genome
13 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.53877079A>G
GRCh37.p13 chr 4NC_000004.11:g.54743246A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.648G=0.352
1000GenomesAmericanSub694A=0.190G=0.810
1000GenomesEast AsianSub1008A=0.060G=0.940
1000GenomesEuropeSub1006A=0.204G=0.796
1000GenomesGlobalStudy-wide5008A=0.280G=0.720
1000GenomesSouth AsianSub978A=0.150G=0.850
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.224G=0.776
The Genome Aggregation DatabaseAfricanSub8714A=0.587G=0.413
The Genome Aggregation DatabaseAmericanSub836A=0.180G=0.820
The Genome Aggregation DatabaseEast AsianSub1612A=0.043G=0.957
The Genome Aggregation DatabaseEuropeSub18438A=0.189G=0.810
The Genome Aggregation DatabaseGlobalStudy-wide29902A=0.297G=0.702
The Genome Aggregation DatabaseOtherSub302A=0.250G=0.750
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.394G=0.605
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.220G=0.780
PMID Title Author Journal
20158304A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.Lind PATwin Res Hum Genet

P-Value

SNP ID p-value Traits Study
rs21020101.09E-05alcohol and nictotine co-dependence20158304

eQTL of rs2102010 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2102010 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr45475241054752556E0679164
chr45475256254752727E0679316
chr45477455054775426E06831304
chr45475199954752123E0698753
chr45475241054752556E0719164
chr45475256254752727E0719316
chr45475241054752556E0729164
chr45475256254752727E0729316
chr45475199954752123E0748753
chr45475241054752556E0749164
chr45475256254752727E0749316
chr45477117454771224E07427928
chr45477125254771319E07428006