rs2114009

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0312 (9343/29884,GnomAD)
C=0369 (10751/29118,TOPMED)
C=0312 (1560/5008,1000G)
C=0235 (904/3854,ALSPAC)
C=0227 (843/3708,TWINSUK)
chr4:133390311 (GRCh38.p7) (4q28.3)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.133390311T>C
GRCh37.p13 chr 4NC_000004.11:g.134311466T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.394C=0.606
1000GenomesAmericanSub694T=0.760C=0.240
1000GenomesEast AsianSub1008T=0.935C=0.065
1000GenomesEuropeSub1006T=0.755C=0.245
1000GenomesGlobalStudy-wide5008T=0.688C=0.312
1000GenomesSouth AsianSub978T=0.720C=0.280
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.765C=0.235
The Genome Aggregation DatabaseAfricanSub8690T=0.459C=0.541
The Genome Aggregation DatabaseAmericanSub838T=0.760C=0.240
The Genome Aggregation DatabaseEast AsianSub1618T=0.948C=0.052
The Genome Aggregation DatabaseEuropeSub18438T=0.766C=0.233
The Genome Aggregation DatabaseGlobalStudy-wide29884T=0.687C=0.312
The Genome Aggregation DatabaseOtherSub300T=0.820C=0.180
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.630C=0.369
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.773C=0.227
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs21140090.00093alcohol dependence20201924

eQTL of rs2114009 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2114009 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.