Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 10 | NC_000010.11:g.62547558C>T |
GRCh37.p13 chr 10 | NC_000010.10:g.64307317C>T |
ZNF365 RefSeqGene | NG_021209.1:g.178402C>T |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
ZNF365 transcript variant C | NM_199451.2:c. | N/A | Intron Variant |
ZNF365 transcript variant D | NM_199452.3:c. | N/A | Intron Variant |
ZNF365 transcript variant A | NM_014951.2:c. | N/A | Genic Downstream Transcript Variant |
ZNF365 transcript variant B | NM_199450.2:c. | N/A | Genic Downstream Transcript Variant |
ZNF365 transcript variant X2 | XM_017015938.1:c. | N/A | Genic Upstream Transcript Variant |
ZNF365 transcript variant X3 | XM_017015939.1:c. | N/A | Genic Upstream Transcript Variant |
ZNF365 transcript variant X4 | XM_017015940.1:c. | N/A | Genic Upstream Transcript Variant |
ZNF365 transcript variant X5 | XM_017015941.1:c. | N/A | Genic Upstream Transcript Variant |
ZNF365 transcript variant X1 | XM_017015937.1:c. | N/A | Genic Downstream Transcript Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.099 | T=0.901 |
1000Genomes | American | Sub | 694 | C=0.560 | T=0.440 |
1000Genomes | East Asian | Sub | 1008 | C=0.403 | T=0.597 |
1000Genomes | Europe | Sub | 1006 | C=0.504 | T=0.496 |
1000Genomes | Global | Study-wide | 5008 | C=0.360 | T=0.640 |
1000Genomes | South Asian | Sub | 978 | C=0.380 | T=0.620 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.526 | T=0.474 |
The Genome Aggregation Database | African | Sub | 8716 | C=0.160 | T=0.840 |
The Genome Aggregation Database | American | Sub | 834 | C=0.480 | T=0.520 |
The Genome Aggregation Database | East Asian | Sub | 1598 | C=0.401 | T=0.599 |
The Genome Aggregation Database | Europe | Sub | 18410 | C=0.552 | T=0.447 |
The Genome Aggregation Database | Global | Study-wide | 29858 | C=0.428 | T=0.571 |
The Genome Aggregation Database | Other | Sub | 300 | C=0.630 | T=0.370 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.360 | T=0.639 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.527 | T=0.473 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs2138564 | 0.00079 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr10 | 64277184 | 64277238 | E067 | -30079 |
chr10 | 64277275 | 64277329 | E067 | -29988 |
chr10 | 64323247 | 64323314 | E067 | 15930 |
chr10 | 64323384 | 64323558 | E067 | 16067 |
chr10 | 64323680 | 64324605 | E067 | 16363 |
chr10 | 64276873 | 64276969 | E068 | -30348 |
chr10 | 64277184 | 64277238 | E068 | -30079 |
chr10 | 64277275 | 64277329 | E068 | -29988 |
chr10 | 64277711 | 64277922 | E068 | -29395 |
chr10 | 64323247 | 64323314 | E068 | 15930 |
chr10 | 64323384 | 64323558 | E068 | 16067 |
chr10 | 64258221 | 64258329 | E069 | -48988 |
chr10 | 64323247 | 64323314 | E069 | 15930 |
chr10 | 64323384 | 64323558 | E069 | 16067 |
chr10 | 64276873 | 64276969 | E071 | -30348 |
chr10 | 64277184 | 64277238 | E071 | -30079 |
chr10 | 64277275 | 64277329 | E071 | -29988 |
chr10 | 64277711 | 64277922 | E071 | -29395 |
chr10 | 64314417 | 64314753 | E071 | 7100 |
chr10 | 64314789 | 64314850 | E071 | 7472 |
chr10 | 64314918 | 64314998 | E071 | 7601 |
chr10 | 64322852 | 64322931 | E071 | 15535 |
chr10 | 64322956 | 64323059 | E071 | 15639 |
chr10 | 64323101 | 64323151 | E071 | 15784 |
chr10 | 64323247 | 64323314 | E071 | 15930 |
chr10 | 64323384 | 64323558 | E071 | 16067 |
chr10 | 64353654 | 64354391 | E071 | 46337 |
chr10 | 64354394 | 64354569 | E071 | 47077 |
chr10 | 64322852 | 64322931 | E072 | 15535 |
chr10 | 64322956 | 64323059 | E072 | 15639 |
chr10 | 64323101 | 64323151 | E072 | 15784 |
chr10 | 64323247 | 64323314 | E072 | 15930 |
chr10 | 64323384 | 64323558 | E072 | 16067 |
chr10 | 64323680 | 64324605 | E072 | 16363 |
chr10 | 64276873 | 64276969 | E073 | -30348 |
chr10 | 64277184 | 64277238 | E073 | -30079 |
chr10 | 64277275 | 64277329 | E073 | -29988 |
chr10 | 64276873 | 64276969 | E074 | -30348 |
chr10 | 64277184 | 64277238 | E074 | -30079 |
chr10 | 64277275 | 64277329 | E074 | -29988 |
chr10 | 64322581 | 64322627 | E074 | 15264 |
chr10 | 64322852 | 64322931 | E074 | 15535 |
chr10 | 64322956 | 64323059 | E074 | 15639 |
chr10 | 64323101 | 64323151 | E074 | 15784 |
chr10 | 64323247 | 64323314 | E074 | 15930 |
chr10 | 64323384 | 64323558 | E074 | 16067 |
chr10 | 64323680 | 64324605 | E074 | 16363 |
chr10 | 64323101 | 64323151 | E081 | 15784 |