SNP Detail Info-rs2206579

Molecule type	Change	Amino acid[Codon]	SO Term
CDKAL1 transcript	NM_017774.3:c.	N/A	Intron Variant
CDKAL1 transcript variant X7	XM_011514718.1:c.	N/A	Intron Variant
CDKAL1 transcript variant X8	XM_011514719.2:c.	N/A	Intron Variant
CDKAL1 transcript variant X9	XM_017010986.1:c.	N/A	Intron Variant
CDKAL1 transcript variant X12	XM_017010987.1:c.	N/A	Intron Variant
CDKAL1 transcript variant X3	XR_001743495.1:n.	N/A	Intron Variant
CDKAL1 transcript variant X4	XR_001743496.1:n.	N/A	Intron Variant
CDKAL1 transcript variant X13	XR_001743500.1:n.	N/A	Intron Variant
CDKAL1 transcript variant X14	XR_001743501.1:n.	N/A	Intron Variant
CDKAL1 transcript variant X1	XR_926265.1:n.	N/A	Intron Variant
CDKAL1 transcript variant X2	XR_926266.1:n.	N/A	Intron Variant
CDKAL1 transcript variant X5	XR_926267.1:n.	N/A	Intron Variant
CDKAL1 transcript variant X9	XR_001743498.1:n.	N/A	Genic Upstream Transcript Variant
CDKAL1 transcript variant X10	XR_001743499.1:n.	N/A	Genic Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.700	G=0.300
1000Genomes	American	Sub	694	A=0.740	G=0.260
1000Genomes	East Asian	Sub	1008	A=0.756	G=0.244
1000Genomes	Europe	Sub	1006	A=0.663	G=0.337
1000Genomes	Global	Study-wide	5008	A=0.722	G=0.278
1000Genomes	South Asian	Sub	978	A=0.770	G=0.230
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.664	G=0.336
The Genome Aggregation Database	African	Sub	8704	A=0.710	G=0.290
The Genome Aggregation Database	American	Sub	832	A=0.770	G=0.230
The Genome Aggregation Database	East Asian	Sub	1606	A=0.722	G=0.278
The Genome Aggregation Database	Europe	Sub	18434	A=0.703	G=0.297
The Genome Aggregation Database	Global	Study-wide	29878	A=0.707	G=0.292
The Genome Aggregation Database	Other	Sub	302	A=0.640	G=0.360
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.696	G=0.303
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.674	G=0.326

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs2206579	0.00099	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr6	20660800	20661246	E068	35166
chr6	20661552	20661865	E068	35918
chr6	20661923	20662361	E068	36289
chr6	20640142	20641070	E069	14508
chr6	20661552	20661865	E069	35918
chr6	20661923	20662361	E069	36289
chr6	20583158	20583455	E070	-42179
chr6	20583518	20583622	E070	-42012
chr6	20583784	20583906	E070	-41728
chr6	20584479	20584591	E070	-41043
chr6	20584635	20584899	E070	-40735
chr6	20585127	20585197	E070	-40437
chr6	20661923	20662361	E070	36289
chr6	20605934	20606146	E071	-19488
chr6	20661552	20661865	E071	35918
chr6	20661923	20662361	E071	36289
chr6	20660800	20661246	E072	35166
chr6	20661552	20661865	E072	35918
chr6	20661923	20662361	E072	36289
chr6	20661923	20662361	E073	36289
chr6	20640142	20641070	E074	14508
chr6	20657467	20657847	E074	31833
chr6	20661552	20661865	E074	35918
chr6	20661923	20662361	E074	36289
chr6	20576455	20576535	E081	-49099
chr6	20576774	20576824	E081	-48810
chr6	20576993	20577045	E081	-48589
chr6	20577600	20578077	E081	-47557
chr6	20608604	20608897	E081	-16737
chr6	20576455	20576535	E082	-49099
chr6	20576774	20576824	E082	-48810
chr6	20576993	20577045	E082	-48589
chr6	20577600	20578077	E082	-47557
chr6	20604523	20604671	E082	-20963

rs2206579