SNP Detail Info-rs2214261

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0176 (3662/20713,GnomAD)
A=0155 (584/3775,1000G)
A=0148 (547/3708,TWINSUK)
A=0155 (449/2889,ALSPAC)

Position: chrX:10337289 (GRCh38.p7) (Xp22.2)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 4 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr X	NC_000023.11:g.10337289G>A
GRCh37.p13 chr X	NC_000023.10:g.10305329G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1003	G=0.781	A=0.219
1000Genomes	American	Sub	524	G=0.880	A=0.120
1000Genomes	East Asian	Sub	764	G=0.890	A=0.110
1000Genomes	Europe	Sub	766	G=0.820	A=0.180
1000Genomes	Global	Study-wide	3775	G=0.845	A=0.155
1000Genomes	South Asian	Sub	718	G=0.900	A=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	2889	G=0.845	A=0.155
The Genome Aggregation Database	African	Sub	5811	G=0.759	A=0.241
The Genome Aggregation Database	American	Sub	609	G=0.900	A=0.100
The Genome Aggregation Database	East Asian	Sub	1023	G=0.896	A=0.104
The Genome Aggregation Database	Europe	Sub	13088	G=0.842	A=0.157
The Genome Aggregation Database	Global	Study-wide	20713	G=0.823	A=0.176
The Genome Aggregation Database	Other	Sub	182	G=0.820	A=0.180
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.852	A=0.148

PMID	Title	Author	Journal
19581569	Genome-wide association study of alcohol dependence.	Treutlein J	Arch Gen Psychiatry

SNP ID	p-value	Traits	Study
rs2214261	9.83E-05	alcohol dependence	19581569

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
ChrX:10305329	MID1	ENSG00000101871.10	G>A	1.4844e-14	-546444	Cerebellum
ChrX:10305329	MID1	ENSG00000101871.10	G>A	1.1663e-11	-546444	Cerebellar_Hemisphere

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chrX	10348550	10348674	E070	43221
chrX	10327505	10327569	E081	22176
chrX	10327642	10327703	E081	22313
chrX	10328107	10328565	E081	22778

rs2214261