rs2215906

Homo sapiens
C>A / C>T
None
Check p-value
SNV (Single Nucleotide Variation)
C==0427 (12786/29908,GnomAD)
C==0418 (12170/29116,TOPMED)
C==0445 (2227/5008,1000G)
C==0462 (1782/3854,ALSPAC)
C==0465 (1725/3708,TWINSUK)
chr2:59548430 (GRCh38.p7) (2p16.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.59548430C>A
GRCh38.p7 chr 2NC_000002.12:g.59548430C>T
GRCh37.p13 chr 2NC_000002.11:g.59775565C>A
GRCh37.p13 chr 2NC_000002.11:g.59775565C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.338T=0.662
1000GenomesAmericanSub694C=0.440T=0.560
1000GenomesEast AsianSub1008C=0.527T=0.473
1000GenomesEuropeSub1006C=0.464T=0.536
1000GenomesGlobalStudy-wide5008C=0.445T=0.555
1000GenomesSouth AsianSub978C=0.480T=0.520
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.462T=0.538
The Genome Aggregation DatabaseAfricanSub8702C=0.357T=0.643
The Genome Aggregation DatabaseAmericanSub838C=0.460T=0.54,
The Genome Aggregation DatabaseEast AsianSub1612C=0.545T=0.455
The Genome Aggregation DatabaseEuropeSub18454C=0.447T=0.552
The Genome Aggregation DatabaseGlobalStudy-wide29908C=0.427T=0.572
The Genome Aggregation DatabaseOtherSub302C=0.480T=0.52,
Trans-Omics for Precision MedicineGlobalStudy-wide29116C=0.418T=0.582
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.465T=0.535
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs22159063.16E-05alcohol consumption23743675

eQTL of rs2215906 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2215906 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction