rs2241109

Homo sapiens
C>T
SLC25A44 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0222 (6661/29948,GnomAD)
T=0193 (5647/29118,TOPMED)
T=0146 (731/5008,1000G)
T=0270 (1039/3854,ALSPAC)
T=0287 (1064/3708,TWINSUK)
chr1:156203291 (GRCh38.p7) (1q22)
AD
GWASdb2
2   publication(s)
See rs on genome

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 1NC_000001.11:g.156203291C>T
GRCh37.p13 chr 1NC_000001.10:g.156173082C>T

Gene: SLC25A44, solute carrier family 25 member 44(plus strand)

Molecule type Change Amino acid[Codon] SO Term
SLC25A44 transcript variant 1NM_001286184.1:c.N/AIntron Variant
SLC25A44 transcript variant 2NM_014655.3:c.N/AIntron Variant
SLC25A44 transcript variant 5NR_104408.1:n.N/AIntron Variant
SLC25A44 transcript variant 3NR_104411.1:n.N/AIntron Variant
SLC25A44 transcript variant 4NR_104412.1:n.N/AIntron Variant
SLC25A44 transcript variant X3XM_006711657.3:c.N/AIntron Variant
SLC25A44 transcript variant X1XM_011510180.1:c.N/AIntron Variant
SLC25A44 transcript variant X2XM_011510181.1:c.N/AIntron Variant
SLC25A44 transcript variant X4XM_017002904.1:c.N/AIntron Variant
SLC25A44 transcript variant X5XM_017002905.1:c.N/AIntron Variant
SLC25A44 transcript variant X6XM_017002906.1:c.N/AIntron Variant
SLC25A44 transcript variant X7XM_017002907.1:c.N/AIntron Variant
SLC25A44 transcript variant X8XM_017002908.1:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.893T=0.107
1000GenomesAmericanSub694C=0.810T=0.190
1000GenomesEast AsianSub1008C=0.978T=0.022
1000GenomesEuropeSub1006C=0.718T=0.282
1000GenomesGlobalStudy-wide5008C=0.854T=0.146
1000GenomesSouth AsianSub978C=0.850T=0.150
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.730T=0.270
The Genome Aggregation DatabaseAfricanSub8712C=0.858T=0.142
The Genome Aggregation DatabaseAmericanSub838C=0.850T=0.150
The Genome Aggregation DatabaseEast AsianSub1620C=0.988T=0.012
The Genome Aggregation DatabaseEuropeSub18476C=0.719T=0.281
The Genome Aggregation DatabaseGlobalStudy-wide29948C=0.777T=0.222
The Genome Aggregation DatabaseOtherSub302C=0.700T=0.300
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.806T=0.193
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.713T=0.287
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res
15637659Linkage disequilibrium patterns and tagSNP transferability among European populations.Mueller JCAm J Hum Genet

P-Value

SNP ID p-value Traits Study
rs22411090.000674alcohol dependence20201924

eQTL of rs2241109 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2241109 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr1156129753156129876E067-43206
chr1156129925156130043E067-43039
chr1156130046156130173E067-42909
chr1156164805156164861E067-8221
chr1156165186156165316E067-7766
chr1156165576156165682E067-7400
chr1156165780156165896E067-7186
chr1156165904156165954E067-7128
chr1156166378156166489E067-6593
chr1156168597156168934E067-4148
chr1156168978156169028E067-4054
chr1156192638156192819E06719556
chr1156192839156193265E06719757
chr1156215879156216550E06742797
chr1156216598156216712E06743516
chr1156216826156217359E06743744
chr1156217774156218184E06744692
chr1156218186156218257E06745104
chr1156218302156218376E06745220
chr1156218870156218929E06745788
chr1156218946156219026E06745864
chr1156221288156221710E06748206
chr1156125206156125297E068-47785
chr1156125513156125582E068-47500
chr1156125655156126019E068-47063
chr1156129753156129876E068-43206
chr1156129925156130043E068-43039
chr1156130046156130173E068-42909
chr1156164805156164861E068-8221
chr1156165186156165316E068-7766
chr1156165576156165682E068-7400
chr1156165780156165896E068-7186
chr1156165904156165954E068-7128
chr1156166378156166489E068-6593
chr1156211377156211578E06838295
chr1156212018156212130E06838936
chr1156212198156212265E06839116
chr1156212295156212382E06839213
chr1156218186156218257E06845104
chr1156218302156218376E06845220
chr1156218870156218929E06845788
chr1156218946156219026E06845864
chr1156220212156220318E06847130
chr1156220575156220662E06847493
chr1156221288156221710E06848206
chr1156129925156130043E069-43039
chr1156130046156130173E069-42909
chr1156164805156164861E069-8221
chr1156165186156165316E069-7766
chr1156165780156165896E069-7186
chr1156165904156165954E069-7128
chr1156166378156166489E069-6593
chr1156171802156171856E069-1226
chr1156192839156193265E06919757
chr1156211377156211578E06938295
chr1156212018156212130E06938936
chr1156212198156212265E06939116
chr1156212295156212382E06939213
chr1156212583156212652E06939501
chr1156212827156212931E06939745
chr1156213594156213683E06940512
chr1156214739156214807E06941657
chr1156214836156214890E06941754
chr1156215879156216550E06942797
chr1156218186156218257E06945104
chr1156218302156218376E06945220
chr1156218870156218929E06945788
chr1156218946156219026E06945864
chr1156220212156220318E06947130
chr1156220575156220662E06947493
chr1156221288156221710E06948206
chr1156164805156164861E070-8221
chr1156165186156165316E070-7766
chr1156165576156165682E070-7400
chr1156165780156165896E070-7186
chr1156165904156165954E070-7128
chr1156166378156166489E070-6593
chr1156214739156214807E07041657
chr1156214836156214890E07041754
chr1156217774156218184E07044692
chr1156218186156218257E07045104
chr1156218302156218376E07045220
chr1156218870156218929E07045788
chr1156129280156129392E071-43690
chr1156129566156129663E071-43419
chr1156129753156129876E071-43206
chr1156129925156130043E071-43039
chr1156130046156130173E071-42909
chr1156164805156164861E071-8221
chr1156165186156165316E071-7766
chr1156165576156165682E071-7400
chr1156165780156165896E071-7186
chr1156165904156165954E071-7128
chr1156166378156166489E071-6593
chr1156192638156192819E07119556
chr1156192839156193265E07119757
chr1156195169156195620E07122087
chr1156211377156211578E07138295
chr1156212018156212130E07138936
chr1156212198156212265E07139116
chr1156212295156212382E07139213
chr1156212583156212652E07139501
chr1156212827156212931E07139745
chr1156213594156213683E07140512
chr1156214025156214136E07140943
chr1156214836156214890E07141754
chr1156218302156218376E07145220
chr1156218870156218929E07145788
chr1156218946156219026E07145864
chr1156220212156220318E07147130
chr1156220575156220662E07147493
chr1156221288156221710E07148206
chr1156222713156222820E07149631
chr1156128612156128679E072-44403
chr1156129280156129392E072-43690
chr1156129925156130043E072-43039
chr1156130046156130173E072-42909
chr1156131931156131971E072-41111
chr1156132261156132663E072-40419
chr1156132819156133177E072-39905
chr1156148059156148387E072-24695
chr1156164805156164861E072-8221
chr1156165186156165316E072-7766
chr1156165576156165682E072-7400
chr1156165780156165896E072-7186
chr1156165904156165954E072-7128
chr1156166378156166489E072-6593
chr1156192638156192819E07219556
chr1156192839156193265E07219757
chr1156210821156210944E07237739
chr1156213594156213683E07240512
chr1156214739156214807E07241657
chr1156214836156214890E07241754
chr1156215879156216550E07242797
chr1156218186156218257E07245104
chr1156218302156218376E07245220
chr1156218870156218929E07245788
chr1156218946156219026E07245864
chr1156220212156220318E07247130
chr1156220575156220662E07247493
chr1156221288156221710E07248206
chr1156129753156129876E073-43206
chr1156129925156130043E073-43039
chr1156130046156130173E073-42909
chr1156131931156131971E073-41111
chr1156164805156164861E073-8221
chr1156165186156165316E073-7766
chr1156165576156165682E073-7400
chr1156165780156165896E073-7186
chr1156165904156165954E073-7128
chr1156166378156166489E073-6593
chr1156192839156193265E07319757
chr1156212018156212130E07338936
chr1156212198156212265E07339116
chr1156212295156212382E07339213
chr1156214739156214807E07341657
chr1156214836156214890E07341754
chr1156215879156216550E07342797
chr1156218186156218257E07345104
chr1156218302156218376E07345220
chr1156218870156218929E07345788
chr1156218946156219026E07345864
chr1156220212156220318E07347130
chr1156220575156220662E07347493
chr1156221288156221710E07348206
chr1156222713156222820E07349631
chr1156222845156222885E07349763
chr1156129566156129663E074-43419
chr1156129753156129876E074-43206
chr1156129925156130043E074-43039
chr1156130046156130173E074-42909
chr1156165576156165682E074-7400
chr1156165780156165896E074-7186
chr1156165904156165954E074-7128
chr1156192638156192819E07419556
chr1156192839156193265E07419757
chr1156212018156212130E07438936
chr1156212198156212265E07439116
chr1156212295156212382E07439213
chr1156212583156212652E07439501
chr1156212827156212931E07439745
chr1156213594156213683E07440512
chr1156214025156214136E07440943
chr1156214739156214807E07441657
chr1156214836156214890E07441754
chr1156217774156218184E07444692
chr1156218186156218257E07445104
chr1156218302156218376E07445220
chr1156218870156218929E07445788
chr1156218946156219026E07445864
chr1156220212156220318E07447130
chr1156220575156220662E07447493
chr1156221288156221710E07448206
chr1156164805156164861E081-8221
chr1156165186156165316E081-7766
chr1156165576156165682E081-7400
chr1156165780156165896E081-7186
chr1156166378156166489E081-6593
chr1156217598156217762E08144516
chr1156217774156218184E08144692
chr1156164805156164861E082-8221
chr1156165186156165316E082-7766
chr1156165576156165682E082-7400
chr1156165780156165896E082-7186
chr1156165904156165954E082-7128
chr1156166378156166489E082-6593
chr1156195169156195620E08222087










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr1156163081156164402E067-8680
chr1156182302156183586E0679220
chr1156163081156164402E068-8680
chr1156182302156183586E0689220
chr1156163081156164402E069-8680
chr1156182302156183586E0699220
chr1156163081156164402E070-8680
chr1156182302156183586E0709220
chr1156163081156164402E071-8680
chr1156182302156183586E0719220
chr1156163081156164402E072-8680
chr1156182302156183586E0729220
chr1156163081156164402E073-8680
chr1156182302156183586E0739220
chr1156163081156164402E074-8680
chr1156182302156183586E0749220
chr1156163081156164402E081-8680
chr1156182302156183586E0819220
chr1156163081156164402E082-8680
chr1156182302156183586E0829220