Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 1 | NC_000001.11:g.156203291C>T |
GRCh37.p13 chr 1 | NC_000001.10:g.156173082C>T |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
SLC25A44 transcript variant 1 | NM_001286184.1:c. | N/A | Intron Variant |
SLC25A44 transcript variant 2 | NM_014655.3:c. | N/A | Intron Variant |
SLC25A44 transcript variant 5 | NR_104408.1:n. | N/A | Intron Variant |
SLC25A44 transcript variant 3 | NR_104411.1:n. | N/A | Intron Variant |
SLC25A44 transcript variant 4 | NR_104412.1:n. | N/A | Intron Variant |
SLC25A44 transcript variant X3 | XM_006711657.3:c. | N/A | Intron Variant |
SLC25A44 transcript variant X1 | XM_011510180.1:c. | N/A | Intron Variant |
SLC25A44 transcript variant X2 | XM_011510181.1:c. | N/A | Intron Variant |
SLC25A44 transcript variant X4 | XM_017002904.1:c. | N/A | Intron Variant |
SLC25A44 transcript variant X5 | XM_017002905.1:c. | N/A | Intron Variant |
SLC25A44 transcript variant X6 | XM_017002906.1:c. | N/A | Intron Variant |
SLC25A44 transcript variant X7 | XM_017002907.1:c. | N/A | Intron Variant |
SLC25A44 transcript variant X8 | XM_017002908.1:c. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.893 | T=0.107 |
1000Genomes | American | Sub | 694 | C=0.810 | T=0.190 |
1000Genomes | East Asian | Sub | 1008 | C=0.978 | T=0.022 |
1000Genomes | Europe | Sub | 1006 | C=0.718 | T=0.282 |
1000Genomes | Global | Study-wide | 5008 | C=0.854 | T=0.146 |
1000Genomes | South Asian | Sub | 978 | C=0.850 | T=0.150 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.730 | T=0.270 |
The Genome Aggregation Database | African | Sub | 8712 | C=0.858 | T=0.142 |
The Genome Aggregation Database | American | Sub | 838 | C=0.850 | T=0.150 |
The Genome Aggregation Database | East Asian | Sub | 1620 | C=0.988 | T=0.012 |
The Genome Aggregation Database | Europe | Sub | 18476 | C=0.719 | T=0.281 |
The Genome Aggregation Database | Global | Study-wide | 29948 | C=0.777 | T=0.222 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.700 | T=0.300 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.806 | T=0.193 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.713 | T=0.287 |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs2241109 | 0.000674 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr1 | 156129753 | 156129876 | E067 | -43206 |
chr1 | 156129925 | 156130043 | E067 | -43039 |
chr1 | 156130046 | 156130173 | E067 | -42909 |
chr1 | 156164805 | 156164861 | E067 | -8221 |
chr1 | 156165186 | 156165316 | E067 | -7766 |
chr1 | 156165576 | 156165682 | E067 | -7400 |
chr1 | 156165780 | 156165896 | E067 | -7186 |
chr1 | 156165904 | 156165954 | E067 | -7128 |
chr1 | 156166378 | 156166489 | E067 | -6593 |
chr1 | 156168597 | 156168934 | E067 | -4148 |
chr1 | 156168978 | 156169028 | E067 | -4054 |
chr1 | 156192638 | 156192819 | E067 | 19556 |
chr1 | 156192839 | 156193265 | E067 | 19757 |
chr1 | 156215879 | 156216550 | E067 | 42797 |
chr1 | 156216598 | 156216712 | E067 | 43516 |
chr1 | 156216826 | 156217359 | E067 | 43744 |
chr1 | 156217774 | 156218184 | E067 | 44692 |
chr1 | 156218186 | 156218257 | E067 | 45104 |
chr1 | 156218302 | 156218376 | E067 | 45220 |
chr1 | 156218870 | 156218929 | E067 | 45788 |
chr1 | 156218946 | 156219026 | E067 | 45864 |
chr1 | 156221288 | 156221710 | E067 | 48206 |
chr1 | 156125206 | 156125297 | E068 | -47785 |
chr1 | 156125513 | 156125582 | E068 | -47500 |
chr1 | 156125655 | 156126019 | E068 | -47063 |
chr1 | 156129753 | 156129876 | E068 | -43206 |
chr1 | 156129925 | 156130043 | E068 | -43039 |
chr1 | 156130046 | 156130173 | E068 | -42909 |
chr1 | 156164805 | 156164861 | E068 | -8221 |
chr1 | 156165186 | 156165316 | E068 | -7766 |
chr1 | 156165576 | 156165682 | E068 | -7400 |
chr1 | 156165780 | 156165896 | E068 | -7186 |
chr1 | 156165904 | 156165954 | E068 | -7128 |
chr1 | 156166378 | 156166489 | E068 | -6593 |
chr1 | 156211377 | 156211578 | E068 | 38295 |
chr1 | 156212018 | 156212130 | E068 | 38936 |
chr1 | 156212198 | 156212265 | E068 | 39116 |
chr1 | 156212295 | 156212382 | E068 | 39213 |
chr1 | 156218186 | 156218257 | E068 | 45104 |
chr1 | 156218302 | 156218376 | E068 | 45220 |
chr1 | 156218870 | 156218929 | E068 | 45788 |
chr1 | 156218946 | 156219026 | E068 | 45864 |
chr1 | 156220212 | 156220318 | E068 | 47130 |
chr1 | 156220575 | 156220662 | E068 | 47493 |
chr1 | 156221288 | 156221710 | E068 | 48206 |
chr1 | 156129925 | 156130043 | E069 | -43039 |
chr1 | 156130046 | 156130173 | E069 | -42909 |
chr1 | 156164805 | 156164861 | E069 | -8221 |
chr1 | 156165186 | 156165316 | E069 | -7766 |
chr1 | 156165780 | 156165896 | E069 | -7186 |
chr1 | 156165904 | 156165954 | E069 | -7128 |
chr1 | 156166378 | 156166489 | E069 | -6593 |
chr1 | 156171802 | 156171856 | E069 | -1226 |
chr1 | 156192839 | 156193265 | E069 | 19757 |
chr1 | 156211377 | 156211578 | E069 | 38295 |
chr1 | 156212018 | 156212130 | E069 | 38936 |
chr1 | 156212198 | 156212265 | E069 | 39116 |
chr1 | 156212295 | 156212382 | E069 | 39213 |
chr1 | 156212583 | 156212652 | E069 | 39501 |
chr1 | 156212827 | 156212931 | E069 | 39745 |
chr1 | 156213594 | 156213683 | E069 | 40512 |
chr1 | 156214739 | 156214807 | E069 | 41657 |
chr1 | 156214836 | 156214890 | E069 | 41754 |
chr1 | 156215879 | 156216550 | E069 | 42797 |
chr1 | 156218186 | 156218257 | E069 | 45104 |
chr1 | 156218302 | 156218376 | E069 | 45220 |
chr1 | 156218870 | 156218929 | E069 | 45788 |
chr1 | 156218946 | 156219026 | E069 | 45864 |
chr1 | 156220212 | 156220318 | E069 | 47130 |
chr1 | 156220575 | 156220662 | E069 | 47493 |
chr1 | 156221288 | 156221710 | E069 | 48206 |
chr1 | 156164805 | 156164861 | E070 | -8221 |
chr1 | 156165186 | 156165316 | E070 | -7766 |
chr1 | 156165576 | 156165682 | E070 | -7400 |
chr1 | 156165780 | 156165896 | E070 | -7186 |
chr1 | 156165904 | 156165954 | E070 | -7128 |
chr1 | 156166378 | 156166489 | E070 | -6593 |
chr1 | 156214739 | 156214807 | E070 | 41657 |
chr1 | 156214836 | 156214890 | E070 | 41754 |
chr1 | 156217774 | 156218184 | E070 | 44692 |
chr1 | 156218186 | 156218257 | E070 | 45104 |
chr1 | 156218302 | 156218376 | E070 | 45220 |
chr1 | 156218870 | 156218929 | E070 | 45788 |
chr1 | 156129280 | 156129392 | E071 | -43690 |
chr1 | 156129566 | 156129663 | E071 | -43419 |
chr1 | 156129753 | 156129876 | E071 | -43206 |
chr1 | 156129925 | 156130043 | E071 | -43039 |
chr1 | 156130046 | 156130173 | E071 | -42909 |
chr1 | 156164805 | 156164861 | E071 | -8221 |
chr1 | 156165186 | 156165316 | E071 | -7766 |
chr1 | 156165576 | 156165682 | E071 | -7400 |
chr1 | 156165780 | 156165896 | E071 | -7186 |
chr1 | 156165904 | 156165954 | E071 | -7128 |
chr1 | 156166378 | 156166489 | E071 | -6593 |
chr1 | 156192638 | 156192819 | E071 | 19556 |
chr1 | 156192839 | 156193265 | E071 | 19757 |
chr1 | 156195169 | 156195620 | E071 | 22087 |
chr1 | 156211377 | 156211578 | E071 | 38295 |
chr1 | 156212018 | 156212130 | E071 | 38936 |
chr1 | 156212198 | 156212265 | E071 | 39116 |
chr1 | 156212295 | 156212382 | E071 | 39213 |
chr1 | 156212583 | 156212652 | E071 | 39501 |
chr1 | 156212827 | 156212931 | E071 | 39745 |
chr1 | 156213594 | 156213683 | E071 | 40512 |
chr1 | 156214025 | 156214136 | E071 | 40943 |
chr1 | 156214836 | 156214890 | E071 | 41754 |
chr1 | 156218302 | 156218376 | E071 | 45220 |
chr1 | 156218870 | 156218929 | E071 | 45788 |
chr1 | 156218946 | 156219026 | E071 | 45864 |
chr1 | 156220212 | 156220318 | E071 | 47130 |
chr1 | 156220575 | 156220662 | E071 | 47493 |
chr1 | 156221288 | 156221710 | E071 | 48206 |
chr1 | 156222713 | 156222820 | E071 | 49631 |
chr1 | 156128612 | 156128679 | E072 | -44403 |
chr1 | 156129280 | 156129392 | E072 | -43690 |
chr1 | 156129925 | 156130043 | E072 | -43039 |
chr1 | 156130046 | 156130173 | E072 | -42909 |
chr1 | 156131931 | 156131971 | E072 | -41111 |
chr1 | 156132261 | 156132663 | E072 | -40419 |
chr1 | 156132819 | 156133177 | E072 | -39905 |
chr1 | 156148059 | 156148387 | E072 | -24695 |
chr1 | 156164805 | 156164861 | E072 | -8221 |
chr1 | 156165186 | 156165316 | E072 | -7766 |
chr1 | 156165576 | 156165682 | E072 | -7400 |
chr1 | 156165780 | 156165896 | E072 | -7186 |
chr1 | 156165904 | 156165954 | E072 | -7128 |
chr1 | 156166378 | 156166489 | E072 | -6593 |
chr1 | 156192638 | 156192819 | E072 | 19556 |
chr1 | 156192839 | 156193265 | E072 | 19757 |
chr1 | 156210821 | 156210944 | E072 | 37739 |
chr1 | 156213594 | 156213683 | E072 | 40512 |
chr1 | 156214739 | 156214807 | E072 | 41657 |
chr1 | 156214836 | 156214890 | E072 | 41754 |
chr1 | 156215879 | 156216550 | E072 | 42797 |
chr1 | 156218186 | 156218257 | E072 | 45104 |
chr1 | 156218302 | 156218376 | E072 | 45220 |
chr1 | 156218870 | 156218929 | E072 | 45788 |
chr1 | 156218946 | 156219026 | E072 | 45864 |
chr1 | 156220212 | 156220318 | E072 | 47130 |
chr1 | 156220575 | 156220662 | E072 | 47493 |
chr1 | 156221288 | 156221710 | E072 | 48206 |
chr1 | 156129753 | 156129876 | E073 | -43206 |
chr1 | 156129925 | 156130043 | E073 | -43039 |
chr1 | 156130046 | 156130173 | E073 | -42909 |
chr1 | 156131931 | 156131971 | E073 | -41111 |
chr1 | 156164805 | 156164861 | E073 | -8221 |
chr1 | 156165186 | 156165316 | E073 | -7766 |
chr1 | 156165576 | 156165682 | E073 | -7400 |
chr1 | 156165780 | 156165896 | E073 | -7186 |
chr1 | 156165904 | 156165954 | E073 | -7128 |
chr1 | 156166378 | 156166489 | E073 | -6593 |
chr1 | 156192839 | 156193265 | E073 | 19757 |
chr1 | 156212018 | 156212130 | E073 | 38936 |
chr1 | 156212198 | 156212265 | E073 | 39116 |
chr1 | 156212295 | 156212382 | E073 | 39213 |
chr1 | 156214739 | 156214807 | E073 | 41657 |
chr1 | 156214836 | 156214890 | E073 | 41754 |
chr1 | 156215879 | 156216550 | E073 | 42797 |
chr1 | 156218186 | 156218257 | E073 | 45104 |
chr1 | 156218302 | 156218376 | E073 | 45220 |
chr1 | 156218870 | 156218929 | E073 | 45788 |
chr1 | 156218946 | 156219026 | E073 | 45864 |
chr1 | 156220212 | 156220318 | E073 | 47130 |
chr1 | 156220575 | 156220662 | E073 | 47493 |
chr1 | 156221288 | 156221710 | E073 | 48206 |
chr1 | 156222713 | 156222820 | E073 | 49631 |
chr1 | 156222845 | 156222885 | E073 | 49763 |
chr1 | 156129566 | 156129663 | E074 | -43419 |
chr1 | 156129753 | 156129876 | E074 | -43206 |
chr1 | 156129925 | 156130043 | E074 | -43039 |
chr1 | 156130046 | 156130173 | E074 | -42909 |
chr1 | 156165576 | 156165682 | E074 | -7400 |
chr1 | 156165780 | 156165896 | E074 | -7186 |
chr1 | 156165904 | 156165954 | E074 | -7128 |
chr1 | 156192638 | 156192819 | E074 | 19556 |
chr1 | 156192839 | 156193265 | E074 | 19757 |
chr1 | 156212018 | 156212130 | E074 | 38936 |
chr1 | 156212198 | 156212265 | E074 | 39116 |
chr1 | 156212295 | 156212382 | E074 | 39213 |
chr1 | 156212583 | 156212652 | E074 | 39501 |
chr1 | 156212827 | 156212931 | E074 | 39745 |
chr1 | 156213594 | 156213683 | E074 | 40512 |
chr1 | 156214025 | 156214136 | E074 | 40943 |
chr1 | 156214739 | 156214807 | E074 | 41657 |
chr1 | 156214836 | 156214890 | E074 | 41754 |
chr1 | 156217774 | 156218184 | E074 | 44692 |
chr1 | 156218186 | 156218257 | E074 | 45104 |
chr1 | 156218302 | 156218376 | E074 | 45220 |
chr1 | 156218870 | 156218929 | E074 | 45788 |
chr1 | 156218946 | 156219026 | E074 | 45864 |
chr1 | 156220212 | 156220318 | E074 | 47130 |
chr1 | 156220575 | 156220662 | E074 | 47493 |
chr1 | 156221288 | 156221710 | E074 | 48206 |
chr1 | 156164805 | 156164861 | E081 | -8221 |
chr1 | 156165186 | 156165316 | E081 | -7766 |
chr1 | 156165576 | 156165682 | E081 | -7400 |
chr1 | 156165780 | 156165896 | E081 | -7186 |
chr1 | 156166378 | 156166489 | E081 | -6593 |
chr1 | 156217598 | 156217762 | E081 | 44516 |
chr1 | 156217774 | 156218184 | E081 | 44692 |
chr1 | 156164805 | 156164861 | E082 | -8221 |
chr1 | 156165186 | 156165316 | E082 | -7766 |
chr1 | 156165576 | 156165682 | E082 | -7400 |
chr1 | 156165780 | 156165896 | E082 | -7186 |
chr1 | 156165904 | 156165954 | E082 | -7128 |
chr1 | 156166378 | 156166489 | E082 | -6593 |
chr1 | 156195169 | 156195620 | E082 | 22087 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr1 | 156163081 | 156164402 | E067 | -8680 |
chr1 | 156182302 | 156183586 | E067 | 9220 |
chr1 | 156163081 | 156164402 | E068 | -8680 |
chr1 | 156182302 | 156183586 | E068 | 9220 |
chr1 | 156163081 | 156164402 | E069 | -8680 |
chr1 | 156182302 | 156183586 | E069 | 9220 |
chr1 | 156163081 | 156164402 | E070 | -8680 |
chr1 | 156182302 | 156183586 | E070 | 9220 |
chr1 | 156163081 | 156164402 | E071 | -8680 |
chr1 | 156182302 | 156183586 | E071 | 9220 |
chr1 | 156163081 | 156164402 | E072 | -8680 |
chr1 | 156182302 | 156183586 | E072 | 9220 |
chr1 | 156163081 | 156164402 | E073 | -8680 |
chr1 | 156182302 | 156183586 | E073 | 9220 |
chr1 | 156163081 | 156164402 | E074 | -8680 |
chr1 | 156182302 | 156183586 | E074 | 9220 |
chr1 | 156163081 | 156164402 | E081 | -8680 |
chr1 | 156182302 | 156183586 | E081 | 9220 |
chr1 | 156163081 | 156164402 | E082 | -8680 |
chr1 | 156182302 | 156183586 | E082 | 9220 |