SNP Detail Info-rs2246564

Sequence Name	Change(s)
GRCh38.p7 chr 9	NC_000009.12:g.36638248A>T
GRCh37.p13 chr 9	NC_000009.11:g.36638245A>T

Molecule type	Change	Amino acid[Codon]	SO Term
MELK transcript variant 2	NM_001256685.1:c.	N/A	Intron Variant
MELK transcript variant 3	NM_001256687.1:c.	N/A	Intron Variant
MELK transcript variant 4	NM_001256688.1:c.	N/A	Intron Variant
MELK transcript variant 5	NM_001256689.1:c.	N/A	Intron Variant
MELK transcript variant 6	NM_001256690.1:c.	N/A	Intron Variant
MELK transcript variant 7	NM_001256691.1:c.	N/A	Intron Variant
MELK transcript variant 8	NM_001256692.1:c.	N/A	Intron Variant
MELK transcript variant 9	NM_001256693.1:c.	N/A	Intron Variant
MELK transcript variant 1	NM_014791.3:c.	N/A	Intron Variant
MELK transcript variant 10	NR_046337.1:n.	N/A	Intron Variant
MELK transcript variant X1	XM_011518076.2:c.	N/A	Intron Variant
MELK transcript variant X2	XM_011518077.1:c.	N/A	Intron Variant
MELK transcript variant X3	XM_011518078.2:c.	N/A	Intron Variant
MELK transcript variant X4	XM_011518079.1:c.	N/A	Intron Variant
MELK transcript variant X5	XM_011518080.1:c.	N/A	Intron Variant
MELK transcript variant X7	XM_011518081.2:c.	N/A	Intron Variant
MELK transcript variant X6	XM_011518082.2:c.	N/A	Intron Variant
MELK transcript variant X8	XM_011518083.2:c.	N/A	Intron Variant
MELK transcript variant X9	XM_011518084.2:c.	N/A	Intron Variant
MELK transcript variant X10	XM_011518085.1:c.	N/A	Intron Variant
MELK transcript variant X11	XM_011518086.2:c.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.902	T=0.098
1000Genomes	American	Sub	694	A=0.930	T=0.070
1000Genomes	East Asian	Sub	1008	A=0.916	T=0.084
1000Genomes	Europe	Sub	1006	A=0.897	T=0.103
1000Genomes	Global	Study-wide	5008	A=0.911	T=0.089
1000Genomes	South Asian	Sub	978	A=0.920	T=0.080
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.899	T=0.101
The Genome Aggregation Database	African	Sub	8708	A=0.901	T=0.099
The Genome Aggregation Database	American	Sub	836	A=0.940	T=0.060
The Genome Aggregation Database	East Asian	Sub	1620	A=0.931	T=0.069
The Genome Aggregation Database	Europe	Sub	18476	A=0.891	T=0.109
The Genome Aggregation Database	Global	Study-wide	29942	A=0.897	T=0.102
The Genome Aggregation Database	Other	Sub	302	A=0.930	T=0.070
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.909	T=0.091
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.902	T=0.098

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs2246564	0.000822	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr9	36624870	36625666	E071	-12579
chr9	36624357	36624766	E073	-13479
chr9	36624870	36625666	E073	-12579

rs2246564