Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 2 | NC_000002.12:g.238075488A>G |
GRCh37.p13 chr 2 | NC_000002.11:g.238984129A>G |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
SCLY transcript | NM_016510.5:c. | N/A | Intron Variant |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
UBE2F-SCLY transcript | NR_037904.1:n. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | A=0.091 | G=0.909 |
1000Genomes | American | Sub | 694 | A=0.180 | G=0.820 |
1000Genomes | East Asian | Sub | 1008 | A=0.029 | G=0.971 |
1000Genomes | Europe | Sub | 1006 | A=0.162 | G=0.838 |
1000Genomes | Global | Study-wide | 5008 | A=0.149 | G=0.851 |
1000Genomes | South Asian | Sub | 978 | A=0.310 | G=0.690 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.176 | G=0.824 |
The Genome Aggregation Database | African | Sub | 8722 | A=0.109 | G=0.891 |
The Genome Aggregation Database | American | Sub | 838 | A=0.170 | G=0.830 |
The Genome Aggregation Database | East Asian | Sub | 1620 | A=0.025 | G=0.975 |
The Genome Aggregation Database | Europe | Sub | 18454 | A=0.142 | G=0.857 |
The Genome Aggregation Database | Global | Study-wide | 29936 | A=0.127 | G=0.872 |
The Genome Aggregation Database | Other | Sub | 302 | A=0.100 | G=0.900 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.129 | G=0.870 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.189 | G=0.811 |
PMID | Title | Author | Journal |
---|---|---|---|
23743675 | A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks. | Kapoor M | Hum Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs2262425 | 0.000135 | alcohol consumption | 23743675 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue |
---|---|---|---|---|---|---|
Chr2:238984129 | SCLY | ENSG00000132330.12 | A>G | 7.8532e-10 | 14599 | Cerebellum |
Chr2:238984129 | SCLY | ENSG00000132330.12 | A>G | 2.8719e-4 | 14599 | Frontal_Cortex_BA9 |
Chr2:238984129 | SCLY | ENSG00000132330.12 | A>G | 1.0714e-8 | 14599 | Cortex |
Chr2:238984129 | SCLY | ENSG00000132330.12 | A>G | 2.0850e-8 | 14599 | Cerebellar_Hemisphere |
Chr2:238984129 | SCLY | ENSG00000132330.12 | A>G | 1.4177e-3 | 14599 | Caudate_basal_ganglia |
Chr2:238984129 | SCLY | ENSG00000132330.12 | A>G | 7.2091e-4 | 14599 | Anterior_cingulate_cortex |
Probe ID | Position | Gene | beta | p-value |
---|---|---|---|---|
cg03558837 | chr2:239029375 | ESPNL | 0.0646226347905888 | 2.4442e-14 |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr2 | 238950342 | 238950447 | E067 | -33682 |
chr2 | 238951505 | 238951913 | E067 | -32216 |
chr2 | 238970839 | 238970899 | E067 | -13230 |
chr2 | 238990205 | 238990255 | E067 | 6076 |
chr2 | 238990452 | 238990751 | E067 | 6323 |
chr2 | 238970839 | 238970899 | E068 | -13230 |
chr2 | 239017313 | 239017876 | E068 | 33184 |
chr2 | 238951505 | 238951913 | E069 | -32216 |
chr2 | 238970839 | 238970899 | E069 | -13230 |
chr2 | 238989790 | 238989866 | E069 | 5661 |
chr2 | 238989941 | 238990032 | E069 | 5812 |
chr2 | 238990205 | 238990255 | E069 | 6076 |
chr2 | 238970839 | 238970899 | E070 | -13230 |
chr2 | 238950342 | 238950447 | E071 | -33682 |
chr2 | 238951505 | 238951913 | E071 | -32216 |
chr2 | 238951961 | 238952020 | E071 | -32109 |
chr2 | 238970839 | 238970899 | E071 | -13230 |
chr2 | 238989247 | 238989354 | E071 | 5118 |
chr2 | 238989790 | 238989866 | E071 | 5661 |
chr2 | 238989941 | 238990032 | E071 | 5812 |
chr2 | 238990205 | 238990255 | E071 | 6076 |
chr2 | 238990452 | 238990751 | E071 | 6323 |
chr2 | 239007116 | 239007529 | E071 | 22987 |
chr2 | 239017176 | 239017226 | E071 | 33047 |
chr2 | 239017313 | 239017876 | E071 | 33184 |
chr2 | 238950342 | 238950447 | E072 | -33682 |
chr2 | 238989790 | 238989866 | E072 | 5661 |
chr2 | 238989941 | 238990032 | E072 | 5812 |
chr2 | 238990205 | 238990255 | E072 | 6076 |
chr2 | 238990452 | 238990751 | E072 | 6323 |
chr2 | 239014417 | 239014467 | E072 | 30288 |
chr2 | 239014951 | 239015001 | E072 | 30822 |
chr2 | 238970839 | 238970899 | E073 | -13230 |
chr2 | 239014951 | 239015001 | E073 | 30822 |
chr2 | 238950342 | 238950447 | E074 | -33682 |
chr2 | 238951505 | 238951913 | E074 | -32216 |
chr2 | 238989790 | 238989866 | E074 | 5661 |
chr2 | 238989941 | 238990032 | E074 | 5812 |
chr2 | 238990452 | 238990751 | E074 | 6323 |
chr2 | 239017313 | 239017876 | E074 | 33184 |
chr2 | 238994008 | 238994058 | E081 | 9879 |
chr2 | 238994372 | 238994803 | E081 | 10243 |
chr2 | 238993565 | 238993671 | E082 | 9436 |
chr2 | 238994008 | 238994058 | E082 | 9879 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr2 | 238968700 | 238970607 | E067 | -13522 |
chr2 | 238968700 | 238970607 | E068 | -13522 |
chr2 | 238968700 | 238970607 | E069 | -13522 |
chr2 | 238968700 | 238970607 | E070 | -13522 |
chr2 | 238968700 | 238970607 | E071 | -13522 |
chr2 | 238968700 | 238970607 | E072 | -13522 |
chr2 | 238968700 | 238970607 | E073 | -13522 |
chr2 | 238968700 | 238970607 | E074 | -13522 |
chr2 | 238968700 | 238970607 | E081 | -13522 |
chr2 | 238968700 | 238970607 | E082 | -13522 |