rs2263190

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0158 (4729/29886,GnomAD)
T==0148 (4318/29118,TOPMED)
T==0134 (671/5008,1000G)
T==0215 (830/3854,ALSPAC)
T==0211 (782/3708,TWINSUK)
chr6:96291517 (GRCh38.p7) (6q16.1)
AD
GWASdb2
1   publication(s)
See rs on genome
3 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.96291517T>C
GRCh37.p13 chr 6NC_000006.11:g.96739393T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.033C=0.967
1000GenomesAmericanSub694T=0.170C=0.830
1000GenomesEast AsianSub1008T=0.039C=0.961
1000GenomesEuropeSub1006T=0.246C=0.754
1000GenomesGlobalStudy-wide5008T=0.134C=0.866
1000GenomesSouth AsianSub978T=0.230C=0.770
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.215C=0.785
The Genome Aggregation DatabaseAfricanSub8720T=0.050C=0.950
The Genome Aggregation DatabaseAmericanSub836T=0.190C=0.810
The Genome Aggregation DatabaseEast AsianSub1612T=0.029C=0.971
The Genome Aggregation DatabaseEuropeSub18418T=0.216C=0.784
The Genome Aggregation DatabaseGlobalStudy-wide29886T=0.158C=0.841
The Genome Aggregation DatabaseOtherSub300T=0.350C=0.650
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.148C=0.851
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.211C=0.789
PMID Title Author Journal
23089632A genome-wide association study of alcohol-dependence symptom counts in extended pedigrees identifies C15orf53.Wang JCMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs22631906.78E-06alcohol dependence23089632

eQTL of rs2263190 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2263190 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr69670551596705586E081-33807
chr69670593396706143E081-33250
chr69670674396706850E081-32543