Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 21 | NC_000021.9:g.20706272G>A |
GRCh37.p13 chr 21 | NC_000021.8:g.22078587G>A |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.053 | A=0.947 |
1000Genomes | American | Sub | 694 | G=0.120 | A=0.880 |
1000Genomes | East Asian | Sub | 1008 | G=0.069 | A=0.931 |
1000Genomes | Europe | Sub | 1006 | G=0.150 | A=0.850 |
1000Genomes | Global | Study-wide | 5008 | G=0.102 | A=0.898 |
1000Genomes | South Asian | Sub | 978 | G=0.140 | A=0.860 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.139 | A=0.861 |
The Genome Aggregation Database | African | Sub | 8732 | G=0.071 | A=0.929 |
The Genome Aggregation Database | American | Sub | 838 | G=0.090 | A=0.910 |
The Genome Aggregation Database | East Asian | Sub | 1622 | G=0.064 | A=0.936 |
The Genome Aggregation Database | Europe | Sub | 18498 | G=0.144 | A=0.855 |
The Genome Aggregation Database | Global | Study-wide | 29992 | G=0.116 | A=0.883 |
The Genome Aggregation Database | Other | Sub | 302 | G=0.100 | A=0.900 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.095 | A=0.904 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.157 | A=0.843 |
PMID | Title | Author | Journal |
---|---|---|---|
23743675 | A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks. | Kapoor M | Hum Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs229369 | 2.87E-05 | alcohol consumption | 23743675 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr21 | 22106843 | 22106990 | E067 | 28256 |
chr21 | 22108425 | 22108506 | E067 | 29838 |
chr21 | 22109266 | 22109361 | E067 | 30679 |
chr21 | 22109266 | 22109361 | E068 | 30679 |
chr21 | 22109417 | 22109555 | E068 | 30830 |
chr21 | 22109766 | 22109877 | E068 | 31179 |
chr21 | 22109915 | 22110206 | E068 | 31328 |
chr21 | 22108425 | 22108506 | E069 | 29838 |
chr21 | 22108649 | 22108754 | E069 | 30062 |
chr21 | 22109266 | 22109361 | E069 | 30679 |
chr21 | 22109417 | 22109555 | E069 | 30830 |
chr21 | 22075251 | 22075412 | E070 | -3175 |
chr21 | 22075854 | 22076066 | E070 | -2521 |
chr21 | 22107387 | 22107450 | E070 | 28800 |
chr21 | 22107732 | 22107777 | E070 | 29145 |
chr21 | 22107922 | 22108038 | E070 | 29335 |
chr21 | 22109266 | 22109361 | E070 | 30679 |
chr21 | 22109417 | 22109555 | E070 | 30830 |
chr21 | 22109766 | 22109877 | E070 | 31179 |
chr21 | 22109915 | 22110206 | E070 | 31328 |
chr21 | 22112300 | 22112353 | E070 | 33713 |
chr21 | 22107387 | 22107450 | E071 | 28800 |
chr21 | 22107732 | 22107777 | E071 | 29145 |
chr21 | 22107922 | 22108038 | E071 | 29335 |
chr21 | 22108425 | 22108506 | E071 | 29838 |
chr21 | 22108649 | 22108754 | E071 | 30062 |
chr21 | 22109266 | 22109361 | E071 | 30679 |
chr21 | 22109766 | 22109877 | E071 | 31179 |
chr21 | 22109915 | 22110206 | E071 | 31328 |
chr21 | 22107387 | 22107450 | E072 | 28800 |
chr21 | 22107732 | 22107777 | E072 | 29145 |
chr21 | 22107922 | 22108038 | E072 | 29335 |
chr21 | 22108425 | 22108506 | E072 | 29838 |
chr21 | 22108649 | 22108754 | E072 | 30062 |
chr21 | 22106614 | 22106677 | E074 | 28027 |
chr21 | 22106843 | 22106990 | E074 | 28256 |
chr21 | 22107387 | 22107450 | E074 | 28800 |
chr21 | 22107732 | 22107777 | E074 | 29145 |
chr21 | 22107922 | 22108038 | E074 | 29335 |
chr21 | 22108425 | 22108506 | E074 | 29838 |
chr21 | 22108649 | 22108754 | E074 | 30062 |
chr21 | 22109266 | 22109361 | E074 | 30679 |
chr21 | 22109915 | 22110206 | E074 | 31328 |
chr21 | 22109417 | 22109555 | E081 | 30830 |
chr21 | 22109766 | 22109877 | E081 | 31179 |
chr21 | 22109915 | 22110206 | E081 | 31328 |