SNP Detail Info-rs2336981

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

CNBD1 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0280 (8387/29904,GnomAD)
G==0265 (7743/29118,TOPMED)
G==0388 (1942/5008,1000G)
G==0285 (1100/3854,ALSPAC)
G==0284 (1054/3708,TWINSUK)

Position: chr8:87243736 (GRCh38.p7) (8q21.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 8	NC_000008.11:g.87243736G>A
GRCh37.p13 chr 8	NC_000008.10:g.88255964G>A

Molecule type	Change	Amino acid[Codon]	SO Term
CNBD1 transcript	NM_173538.2:c.	N/A	Intron Variant
CNBD1 transcript variant X2	XM_017013149.1:c.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.213	A=0.787
1000Genomes	American	Sub	694	G=0.440	A=0.560
1000Genomes	East Asian	Sub	1008	G=0.599	A=0.401
1000Genomes	Europe	Sub	1006	G=0.302	A=0.698
1000Genomes	Global	Study-wide	5008	G=0.388	A=0.612
1000Genomes	South Asian	Sub	978	G=0.460	A=0.540
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.285	A=0.715
The Genome Aggregation Database	African	Sub	8712	G=0.208	A=0.792
The Genome Aggregation Database	American	Sub	826	G=0.450	A=0.550
The Genome Aggregation Database	East Asian	Sub	1610	G=0.635	A=0.365
The Genome Aggregation Database	Europe	Sub	18454	G=0.275	A=0.724
The Genome Aggregation Database	Global	Study-wide	29904	G=0.280	A=0.719
The Genome Aggregation Database	Other	Sub	302	G=0.280	A=0.720
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.265	A=0.734
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.284	A=0.716

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs2336981	0.0000501	alcoholism	pha002891
rs2336981	0.0000501	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs2336981