rs2345546

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0106 (3087/29118,TOPMED)
T=0106 (530/5008,1000G)
chr16:25416151 (GRCh38.p7) (16p12.1)
AD
GWASCatalog
1   publication(s)
See rs on genome
2 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 16NC_000016.10:g.25416151C>T
GRCh37.p13 chr 16NC_000016.9:g.25427472C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.937T=0.063
1000GenomesAmericanSub694C=0.870T=0.130
1000GenomesEast AsianSub1008C=0.867T=0.133
1000GenomesEuropeSub1006C=0.859T=0.141
1000GenomesGlobalStudy-wide5008C=0.894T=0.106
1000GenomesSouth AsianSub978C=0.920T=0.080
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.894T=0.106
PMID Title Author Journal
29071344Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.Zhou HJAMA Psychiatry

P-Value

SNP ID p-value Traits Study
rs23455462E-06alcohol dependence29071344

eQTL of rs2345546 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2345546 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr162543111125431201E0823639
chr162543124325431338E0823771