Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 7 | NC_000007.14:g.75581343C>T |
GRCh37.p13 chr 7 fix patch HG1257_PATCH | NW_003871064.1:g.3110579C>T |
HIP1 RefSeqGene | NG_023251.2:g.162619G>A |
GRCh37.p13 chr 7 | NC_000007.13:g.75210659C>T |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
HIP1 transcript variant 2 | NM_001243198.2:c. | N/A | Intron Variant |
HIP1 transcript variant 1 | NM_005338.6:c. | N/A | Intron Variant |
HIP1 transcript variant X3 | XM_005250304.2:c. | N/A | Intron Variant |
HIP1 transcript variant X4 | XM_005250305.2:c. | N/A | Intron Variant |
HIP1 transcript variant X1 | XM_011516116.2:c. | N/A | Intron Variant |
HIP1 transcript variant X2 | XM_017012099.1:c. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.886 | T=0.114 |
1000Genomes | American | Sub | 694 | C=0.920 | T=0.080 |
1000Genomes | East Asian | Sub | 1008 | C=0.927 | T=0.073 |
1000Genomes | Europe | Sub | 1006 | C=0.920 | T=0.080 |
1000Genomes | Global | Study-wide | 5008 | C=0.901 | T=0.099 |
1000Genomes | South Asian | Sub | 978 | C=0.860 | T=0.140 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.936 | T=0.064 |
The Exome Aggregation Consortium | American | Sub | 14814 | C=0.905 | T=0.094 |
The Exome Aggregation Consortium | Asian | Sub | 19294 | C=0.872 | T=0.127 |
The Exome Aggregation Consortium | Europe | Sub | 49584 | C=0.921 | T=0.078 |
The Exome Aggregation Consortium | Global | Study-wide | 84316 | C=0.907 | T=0.093 |
The Exome Aggregation Consortium | Other | Sub | 624 | C=0.880 | T=0.120 |
The Genome Aggregation Database | African | Sub | 8720 | C=0.889 | T=0.111 |
The Genome Aggregation Database | American | Sub | 838 | C=0.950 | T=0.050 |
The Genome Aggregation Database | East Asian | Sub | 1616 | C=0.931 | T=0.069 |
The Genome Aggregation Database | Europe | Sub | 18488 | C=0.929 | T=0.070 |
The Genome Aggregation Database | Global | Study-wide | 29964 | C=0.918 | T=0.081 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.970 | T=0.030 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.915 | T=0.085 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.924 | T=0.076 |
PMID | Title | Author | Journal |
---|---|---|---|
21529783 | A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications. | Heath AC | Biol Psychiatry |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs237240 | 2.9E-05 | alcoholism (heaviness of drinking) | 21529783 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue |
---|---|---|---|---|---|---|
Chr7:75210659 | NCF1C | ENSG00000165178.8 | C>T | 2.0550e-3 | 622811 | Caudate_basal_ganglia |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr7 | 3067653 | 3068113 | E070 | -42466 |
chr7 | 3068237 | 3068513 | E070 | -42066 |
chr7 | 3078115 | 3078261 | E070 | -32318 |
chr7 | 3078321 | 3078439 | E070 | -32140 |
chr7 | 3078514 | 3078598 | E070 | -31981 |
chr7 | 3066663 | 3066946 | E081 | -43633 |
chr7 | 3067009 | 3067401 | E081 | -43178 |
chr7 | 3068237 | 3068513 | E081 | -42066 |
chr7 | 3068612 | 3068761 | E081 | -41818 |
chr7 | 3068942 | 3069047 | E081 | -41532 |
chr7 | 3093531 | 3093598 | E081 | -16981 |
chr7 | 3123046 | 3123217 | E081 | 12467 |
chr7 | 3123746 | 3123816 | E081 | 13167 |