rs2403199

Homo sapiens
A>C
None
Check p-value
SNV (Single Nucleotide Variation)
A==0056 (1678/29962,GnomAD)
A==0080 (2330/29118,TOPMED)
A==0074 (373/5008,1000G)
A==0026 (99/3854,ALSPAC)
A==0028 (102/3708,TWINSUK)
chr14:103595731 (GRCh38.p7) (14q32.33)
AD
GWASdb2
1   publication(s)
See rs on genome

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 14NC_000014.9:g.103595731A>C
GRCh37.p13 chr 14NC_000014.8:g.104062068A>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.166C=0.834
1000GenomesAmericanSub694A=0.090C=0.910
1000GenomesEast AsianSub1008A=0.019C=0.981
1000GenomesEuropeSub1006A=0.027C=0.973
1000GenomesGlobalStudy-wide5008A=0.074C=0.926
1000GenomesSouth AsianSub978A=0.050C=0.950
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.026C=0.974
The Genome Aggregation DatabaseAfricanSub8710A=0.137C=0.863
The Genome Aggregation DatabaseAmericanSub838A=0.080C=0.920
The Genome Aggregation DatabaseEast AsianSub1622A=0.013C=0.987
The Genome Aggregation DatabaseEuropeSub18490A=0.020C=0.979
The Genome Aggregation DatabaseGlobalStudy-wide29962A=0.056C=0.944
The Genome Aggregation DatabaseOtherSub302A=0.060C=0.940
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.080C=0.920
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.028C=0.972
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs24031990.000468alcohol dependence20201924

eQTL of rs2403199 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2403199 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr14104012348104012564E067-49504
chr14104012605104012769E067-49299
chr14104012829104013766E067-48302
chr14104015037104015211E067-46857
chr14104015212104015502E067-46566
chr14104015509104015610E067-46458
chr14104015738104016561E067-45507
chr14104016598104016660E067-45408
chr14104016780104017108E067-44960
chr14104017132104017457E067-44611
chr14104017526104019273E067-42795
chr14104023928104024081E067-37987
chr14104026184104026413E067-35655
chr14104026452104026570E067-35498
chr14104026671104026728E067-35340
chr14104026778104026930E067-35138
chr14104027105104027159E067-34909
chr14104040708104040796E067-21272
chr14104041060104041140E067-20928
chr14104041385104041531E067-20537
chr14104042726104043413E067-18655
chr14104043494104043598E067-18470
chr14104043691104043827E067-18241
chr14104060025104060191E067-1877
chr14104060451104061492E067-576
chr14104061670104062187E0670
chr14104074381104074631E06712313
chr14104098295104098345E06736227
chr14104098893104098943E06736825
chr14104099274104099331E06737206
chr14104099694104099783E06737626
chr14104099871104100007E06737803
chr14104100597104100748E06738529
chr14104101233104101283E06739165
chr14104101289104101391E06739221
chr14104101562104101656E06739494
chr14104104157104104210E06742089
chr14104104327104104377E06742259
chr14104104879104104923E06742811
chr14104105111104105162E06743043
chr14104012605104012769E068-49299
chr14104012829104013766E068-48302
chr14104015037104015211E068-46857
chr14104015212104015502E068-46566
chr14104015509104015610E068-46458
chr14104015738104016561E068-45507
chr14104016780104017108E068-44960
chr14104017132104017457E068-44611
chr14104017526104019273E068-42795
chr14104023092104023231E068-38837
chr14104023358104023865E068-38203
chr14104023928104024081E068-37987
chr14104024146104024204E068-37864
chr14104024425104025205E068-36863
chr14104025264104025324E068-36744
chr14104026184104026413E068-35655
chr14104026452104026570E068-35498
chr14104026671104026728E068-35340
chr14104026778104026930E068-35138
chr14104027105104027159E068-34909
chr14104027167104027217E068-34851
chr14104035697104035794E068-26274
chr14104040574104040639E068-21429
chr14104040708104040796E068-21272
chr14104041060104041140E068-20928
chr14104041385104041531E068-20537
chr14104041761104041838E068-20230
chr14104042726104043413E068-18655
chr14104043494104043598E068-18470
chr14104043691104043827E068-18241
chr14104043858104043928E068-18140
chr14104045124104045164E068-16904
chr14104060451104061492E068-576
chr14104061670104062187E0680
chr14104064392104064613E0682324
chr14104074706104074847E06812638
chr14104104157104104210E06842089
chr14104104327104104377E06842259
chr14104104879104104923E06842811
chr14104105111104105162E06843043
chr14104111685104111765E06849617
chr14104111807104111867E06849739
chr14104012348104012564E069-49504
chr14104012605104012769E069-49299
chr14104012829104013766E069-48302
chr14104014595104014686E069-47382
chr14104014714104014934E069-47134
chr14104015037104015211E069-46857
chr14104015212104015502E069-46566
chr14104015509104015610E069-46458
chr14104015738104016561E069-45507
chr14104016780104017108E069-44960
chr14104017132104017457E069-44611
chr14104017526104019273E069-42795
chr14104023092104023231E069-38837
chr14104023358104023865E069-38203
chr14104026184104026413E069-35655
chr14104026452104026570E069-35498
chr14104026671104026728E069-35340
chr14104026778104026930E069-35138
chr14104027105104027159E069-34909
chr14104027167104027217E069-34851
chr14104032912104033076E069-28992
chr14104034878104034918E069-27150
chr14104035264104035648E069-26420
chr14104035697104035794E069-26274
chr14104035913104036064E069-26004
chr14104041060104041140E069-20928
chr14104041385104041531E069-20537
chr14104041761104041838E069-20230
chr14104042726104043413E069-18655
chr14104043494104043598E069-18470
chr14104043691104043827E069-18241
chr14104043858104043928E069-18140
chr14104060025104060191E069-1877
chr14104060451104061492E069-576
chr14104061670104062187E0690
chr14104074381104074631E06912313
chr14104074706104074847E06912638
chr14104098295104098345E06936227
chr14104098893104098943E06936825
chr14104099274104099331E06937206
chr14104099694104099783E06937626
chr14104099871104100007E06937803
chr14104100597104100748E06938529
chr14104100874104100924E06938806
chr14104104062104104126E06941994
chr14104104157104104210E06942089
chr14104104327104104377E06942259
chr14104104879104104923E06942811
chr14104105111104105162E06943043
chr14104107525104107866E06945457
chr14104012348104012564E070-49504
chr14104012605104012769E070-49299
chr14104012829104013766E070-48302
chr14104015037104015211E070-46857
chr14104015212104015502E070-46566
chr14104015509104015610E070-46458
chr14104015738104016561E070-45507
chr14104016598104016660E070-45408
chr14104016780104017108E070-44960
chr14104017132104017457E070-44611
chr14104017526104019273E070-42795
chr14104023928104024081E070-37987
chr14104024146104024204E070-37864
chr14104024425104025205E070-36863
chr14104026184104026413E070-35655
chr14104026452104026570E070-35498
chr14104026671104026728E070-35340
chr14104026778104026930E070-35138
chr14104031363104031489E070-30579
chr14104034178104034228E070-27840
chr14104034448104034513E070-27555
chr14104034878104034918E070-27150
chr14104037396104037496E070-24572
chr14104042726104043413E070-18655
chr14104043494104043598E070-18470
chr14104043691104043827E070-18241
chr14104043858104043928E070-18140
chr14104060451104061492E070-576
chr14104061670104062187E0700
chr14104074381104074631E07012313
chr14104074706104074847E07012638
chr14104100597104100748E07038529
chr14104100874104100924E07038806
chr14104012348104012564E071-49504
chr14104012605104012769E071-49299
chr14104012829104013766E071-48302
chr14104014439104014500E071-47568
chr14104014595104014686E071-47382
chr14104014714104014934E071-47134
chr14104015037104015211E071-46857
chr14104015212104015502E071-46566
chr14104015509104015610E071-46458
chr14104015738104016561E071-45507
chr14104016598104016660E071-45408
chr14104016780104017108E071-44960
chr14104017132104017457E071-44611
chr14104017526104019273E071-42795
chr14104023358104023865E071-38203
chr14104023928104024081E071-37987
chr14104024146104024204E071-37864
chr14104024425104025205E071-36863
chr14104026452104026570E071-35498
chr14104026671104026728E071-35340
chr14104026778104026930E071-35138
chr14104027105104027159E071-34909
chr14104027167104027217E071-34851
chr14104031363104031489E071-30579
chr14104035264104035648E071-26420
chr14104035697104035794E071-26274
chr14104035913104036064E071-26004
chr14104040442104040509E071-21559
chr14104040574104040639E071-21429
chr14104040708104040796E071-21272
chr14104041060104041140E071-20928
chr14104041385104041531E071-20537
chr14104041761104041838E071-20230
chr14104042726104043413E071-18655
chr14104060451104061492E071-576
chr14104061670104062187E0710
chr14104064392104064613E0712324
chr14104074706104074847E07112638
chr14104099274104099331E07137206
chr14104099694104099783E07137626
chr14104099871104100007E07137803
chr14104100597104100748E07138529
chr14104100874104100924E07138806
chr14104101233104101283E07139165
chr14104101289104101391E07139221
chr14104101562104101656E07139494
chr14104104157104104210E07142089
chr14104104327104104377E07142259
chr14104012348104012564E072-49504
chr14104012605104012769E072-49299
chr14104012829104013766E072-48302
chr14104014714104014934E072-47134
chr14104015037104015211E072-46857
chr14104015212104015502E072-46566
chr14104015509104015610E072-46458
chr14104016598104016660E072-45408
chr14104016780104017108E072-44960
chr14104017132104017457E072-44611
chr14104017526104019273E072-42795
chr14104023358104023865E072-38203
chr14104023928104024081E072-37987
chr14104024146104024204E072-37864
chr14104024425104025205E072-36863
chr14104025264104025324E072-36744
chr14104026778104026930E072-35138
chr14104027105104027159E072-34909
chr14104027167104027217E072-34851
chr14104031363104031489E072-30579
chr14104035264104035648E072-26420
chr14104035697104035794E072-26274
chr14104040442104040509E072-21559
chr14104040574104040639E072-21429
chr14104040708104040796E072-21272
chr14104041060104041140E072-20928
chr14104041385104041531E072-20537
chr14104041761104041838E072-20230
chr14104042726104043413E072-18655
chr14104043494104043598E072-18470
chr14104043691104043827E072-18241
chr14104043858104043928E072-18140
chr14104060025104060191E072-1877
chr14104060451104061492E072-576
chr14104061670104062187E0720
chr14104064392104064613E0722324
chr14104099694104099783E07237626
chr14104099871104100007E07237803
chr14104100597104100748E07238529
chr14104100874104100924E07238806
chr14104104062104104126E07241994
chr14104104157104104210E07242089
chr14104104327104104377E07242259
chr14104104879104104923E07242811
chr14104105111104105162E07243043
chr14104107525104107866E07245457
chr14104012348104012564E073-49504
chr14104012605104012769E073-49299
chr14104012829104013766E073-48302
chr14104014714104014934E073-47134
chr14104015037104015211E073-46857
chr14104015212104015502E073-46566
chr14104015509104015610E073-46458
chr14104015738104016561E073-45507
chr14104016598104016660E073-45408
chr14104016780104017108E073-44960
chr14104017132104017457E073-44611
chr14104017526104019273E073-42795
chr14104023358104023865E073-38203
chr14104024425104025205E073-36863
chr14104025264104025324E073-36744
chr14104026184104026413E073-35655
chr14104026452104026570E073-35498
chr14104026671104026728E073-35340
chr14104026778104026930E073-35138
chr14104031363104031489E073-30579
chr14104035264104035648E073-26420
chr14104035697104035794E073-26274
chr14104035913104036064E073-26004
chr14104040574104040639E073-21429
chr14104040708104040796E073-21272
chr14104041060104041140E073-20928
chr14104041385104041531E073-20537
chr14104041761104041838E073-20230
chr14104042726104043413E073-18655
chr14104043494104043598E073-18470
chr14104043691104043827E073-18241
chr14104043858104043928E073-18140
chr14104044494104044557E073-17511
chr14104044755104044815E073-17253
chr14104045124104045164E073-16904
chr14104074381104074631E07312313
chr14104074706104074847E07312638
chr14104091239104091940E07329171
chr14104091958104092106E07329890
chr14104092240104092290E07330172
chr14104092360104092872E07330292
chr14104099694104099783E07337626
chr14104099871104100007E07337803
chr14104100597104100748E07338529
chr14104100874104100924E07338806
chr14104101233104101283E07339165
chr14104101289104101391E07339221
chr14104101562104101656E07339494
chr14104101924104101978E07339856
chr14104104157104104210E07342089
chr14104104327104104377E07342259
chr14104104879104104923E07342811
chr14104105111104105162E07343043
chr14104107525104107866E07345457
chr14104012829104013766E074-48302
chr14104014439104014500E074-47568
chr14104014595104014686E074-47382
chr14104014714104014934E074-47134
chr14104015037104015211E074-46857
chr14104015212104015502E074-46566
chr14104015509104015610E074-46458
chr14104015738104016561E074-45507
chr14104016598104016660E074-45408
chr14104016780104017108E074-44960
chr14104017132104017457E074-44611
chr14104017526104019273E074-42795
chr14104023092104023231E074-38837
chr14104023358104023865E074-38203
chr14104023928104024081E074-37987
chr14104025264104025324E074-36744
chr14104026184104026413E074-35655
chr14104026452104026570E074-35498
chr14104026671104026728E074-35340
chr14104026778104026930E074-35138
chr14104027105104027159E074-34909
chr14104027167104027217E074-34851
chr14104031363104031489E074-30579
chr14104035264104035648E074-26420
chr14104035697104035794E074-26274
chr14104041060104041140E074-20928
chr14104041385104041531E074-20537
chr14104042726104043413E074-18655
chr14104043494104043598E074-18470
chr14104043691104043827E074-18241
chr14104060025104060191E074-1877
chr14104060451104061492E074-576
chr14104074381104074631E07412313
chr14104091239104091940E07429171
chr14104099274104099331E07437206
chr14104100597104100748E07438529
chr14104100874104100924E07438806
chr14104101233104101283E07439165
chr14104101289104101391E07439221
chr14104101562104101656E07439494
chr14104104157104104210E07442089
chr14104104327104104377E07442259
chr14104104879104104923E07442811
chr14104105111104105162E07443043
chr14104012348104012564E081-49504
chr14104012605104012769E081-49299
chr14104012829104013766E081-48302
chr14104014021104014175E081-47893
chr14104014439104014500E081-47568
chr14104014595104014686E081-47382
chr14104014714104014934E081-47134
chr14104015738104016561E081-45507
chr14104016598104016660E081-45408
chr14104016780104017108E081-44960
chr14104017132104017457E081-44611
chr14104026184104026413E081-35655
chr14104026452104026570E081-35498
chr14104026671104026728E081-35340
chr14104026778104026930E081-35138
chr14104027105104027159E081-34909
chr14104027167104027217E081-34851
chr14104031363104031489E081-30579
chr14104034878104034918E081-27150
chr14104060451104061492E081-576
chr14104061670104062187E0810
chr14104074381104074631E08112313
chr14104074706104074847E08112638
chr14104098295104098345E08136227
chr14104099274104099331E08137206
chr14104099694104099783E08137626
chr14104104879104104923E08142811
chr14104105111104105162E08143043
chr14104012348104012564E082-49504
chr14104012605104012769E082-49299
chr14104012829104013766E082-48302
chr14104015037104015211E082-46857
chr14104015212104015502E082-46566
chr14104015509104015610E082-46458
chr14104015738104016561E082-45507
chr14104016598104016660E082-45408
chr14104016780104017108E082-44960
chr14104017132104017457E082-44611
chr14104023928104024081E082-37987
chr14104024425104025205E082-36863
chr14104032912104033076E082-28992
chr14104060451104061492E082-576
chr14104061670104062187E0820
chr14104062511104062562E082443
chr14104074381104074631E08212313
chr14104074706104074847E08212638
chr14104099274104099331E08237206
chr14104099694104099783E08237626
chr14104101233104101283E08239165
chr14104101289104101391E08239221










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr14104027675104030088E067-31980
chr14104093901104096591E06731833
chr14104096611104096661E06734543
chr14104096697104096741E06734629
chr14104027675104030088E068-31980
chr14104093901104096591E06831833
chr14104096611104096661E06834543
chr14104096697104096741E06834629
chr14104027675104030088E069-31980
chr14104093901104096591E06931833
chr14104096611104096661E06934543
chr14104096697104096741E06934629
chr14104027675104030088E070-31980
chr14104093901104096591E07031833
chr14104096611104096661E07034543
chr14104096697104096741E07034629
chr14104027675104030088E071-31980
chr14104093901104096591E07131833
chr14104096611104096661E07134543
chr14104096697104096741E07134629
chr14104027675104030088E072-31980
chr14104093901104096591E07231833
chr14104096611104096661E07234543
chr14104096697104096741E07234629
chr14104027675104030088E073-31980
chr14104093901104096591E07331833
chr14104096611104096661E07334543
chr14104096697104096741E07334629
chr14104027675104030088E074-31980
chr14104093901104096591E07431833
chr14104096611104096661E07434543
chr14104096697104096741E07434629
chr14104027675104030088E081-31980
chr14104096611104096661E08134543
chr14104096697104096741E08134629
chr14104027675104030088E082-31980
chr14104093901104096591E08231833
chr14104096611104096661E08234543
chr14104096697104096741E08234629