| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 2 | NC_000002.12:g.129227852A>G |
| GRCh37.p13 chr 2 | NC_000002.11:g.129985425A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.321 | G=0.679 |
| 1000Genomes | American | Sub | 694 | A=0.530 | G=0.470 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.748 | G=0.252 |
| 1000Genomes | Europe | Sub | 1006 | A=0.460 | G=0.540 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.510 | G=0.490 |
| 1000Genomes | South Asian | Sub | 978 | A=0.550 | G=0.450 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.478 | G=0.522 |
| The Genome Aggregation Database | African | Sub | 8714 | A=0.369 | G=0.631 |
| The Genome Aggregation Database | American | Sub | 836 | A=0.540 | G=0.460 |
| The Genome Aggregation Database | East Asian | Sub | 1616 | A=0.804 | G=0.196 |
| The Genome Aggregation Database | Europe | Sub | 18470 | A=0.480 | G=0.519 |
| The Genome Aggregation Database | Global | Study-wide | 29938 | A=0.466 | G=0.533 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.410 | G=0.590 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.429 | G=0.570 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.490 | G=0.510 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 24962325 | Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families. | Kapoor M | Drug Alcohol Depend |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs2406641 | 9.24E-07 | alcohol dependence (age at onset) | 24962325 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr2 | 129990903 | 129991022 | E070 | 5478 |
| chr2 | 129991443 | 129991904 | E070 | 6018 |
| chr2 | 129990903 | 129991022 | E081 | 5478 |
| chr2 | 129991443 | 129991904 | E081 | 6018 |
| chr2 | 129996773 | 129997036 | E081 | 11348 |
| chr2 | 130010223 | 130010353 | E081 | 24798 |
| chr2 | 130010398 | 130011293 | E081 | 24973 |
| chr2 | 129996773 | 129997036 | E082 | 11348 |
| chr2 | 130010223 | 130010353 | E082 | 24798 |