SNP Detail Info-rs2410729

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0114 (3442/29976,GnomAD)
G==0076 (2240/29118,TOPMED)
G==0042 (210/5008,1000G)
G==0137 (527/3854,ALSPAC)
G==0139 (516/3708,TWINSUK)

Position: chr5:87044070 (GRCh38.p7) (5q14.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 12 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 5	NC_000005.10:g.87044070G>A
GRCh37.p13 chr 5	NC_000005.9:g.86339887G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.010	A=0.990
1000Genomes	American	Sub	694	G=0.050	A=0.950
1000Genomes	East Asian	Sub	1008	G=0.001	A=0.999
1000Genomes	Europe	Sub	1006	G=0.140	A=0.860
1000Genomes	Global	Study-wide	5008	G=0.042	A=0.958
1000Genomes	South Asian	Sub	978	G=0.020	A=0.980
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.137	A=0.863
The Genome Aggregation Database	African	Sub	8732	G=0.025	A=0.975
The Genome Aggregation Database	American	Sub	838	G=0.080	A=0.920
The Genome Aggregation Database	East Asian	Sub	1622	G=0.002	A=0.998
The Genome Aggregation Database	Europe	Sub	18482	G=0.168	A=0.831
The Genome Aggregation Database	Global	Study-wide	29976	G=0.114	A=0.885
The Genome Aggregation Database	Other	Sub	302	G=0.130	A=0.870
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.076	A=0.923
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.139	A=0.861

PMID	Title	Author	Journal
21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Heath AC	Biol Psychiatry

SNP ID	p-value	Traits	Study
rs2410729	4.7E-05	alcoholism (heaviness of drinking)	21529783

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr5	86315488	86316412	E067	-23475
chr5	86316529	86316591	E067	-23296
chr5	86315488	86316412	E068	-23475
chr5	86316529	86316591	E068	-23296
chr5	86315488	86316412	E069	-23475
chr5	86316529	86316591	E069	-23296
chr5	86315488	86316412	E070	-23475
chr5	86315488	86316412	E071	-23475
chr5	86316529	86316591	E071	-23296
chr5	86376916	86377244	E071	37029
chr5	86315488	86316412	E074	-23475
chr5	86316529	86316591	E074	-23296

rs2410729