rs2413913

Homo sapiens
C>T
CEP152 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0043 (1298/29974,GnomAD)
T=0057 (1661/29118,TOPMED)
T=0104 (519/5008,1000G)
T=0009 (33/3854,ALSPAC)
T=0010 (37/3708,TWINSUK)
chr15:48718852 (GRCh38.p7) (15q21.1)
AD
GWASdb2
1   publication(s)
See rs on genome
3 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.48718852C>T
GRCh37.p13 chr 15NC_000015.9:g.49011049C>T

Gene: CEP152, centrosomal protein 152(minus strand)

Molecule type Change Amino acid[Codon] SO Term
CEP152 transcript variant 1NM_001194998.1:c.N/AGenic Downstream Transcript Variant
CEP152 transcript variant 2NM_014985.3:c.N/AGenic Downstream Transcript Variant
CEP152 transcript variant X1XM_006720437.3:c.N/AGenic Downstream Transcript Variant
CEP152 transcript variant X2XM_011521373.2:c.N/AGenic Downstream Transcript Variant
CEP152 transcript variant X4XM_011521374.2:c.N/AGenic Downstream Transcript Variant
CEP152 transcript variant X5XM_011521375.2:c.N/AGenic Downstream Transcript Variant
CEP152 transcript variant X10XM_011521378.2:c.N/AGenic Downstream Transcript Variant
CEP152 transcript variant X11XM_011521379.2:c.N/AGenic Downstream Transcript Variant
CEP152 transcript variant X12XM_011521381.2:c.N/AGenic Downstream Transcript Variant
CEP152 transcript variant X3XM_017022014.1:c.N/AGenic Downstream Transcript Variant
CEP152 transcript variant X13XM_017022015.1:c.N/AGenic Downstream Transcript Variant
CEP152 transcript variant X14XM_017022016.1:c.N/AGenic Downstream Transcript Variant
CEP152 transcript variant X7XR_001751153.1:n.N/AIntron Variant
CEP152 transcript variant X8XR_931770.2:n.N/AIntron Variant
CEP152 transcript variant X9XR_931775.2:n.N/AIntron Variant
CEP152 transcript variant X6XR_931769.2:n.N/AGenic Downstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.905T=0.095
1000GenomesAmericanSub694C=0.880T=0.120
1000GenomesEast AsianSub1008C=0.740T=0.260
1000GenomesEuropeSub1006C=0.990T=0.010
1000GenomesGlobalStudy-wide5008C=0.896T=0.104
1000GenomesSouth AsianSub978C=0.960T=0.040
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.991T=0.009
The Genome Aggregation DatabaseAfricanSub8722C=0.919T=0.081
The Genome Aggregation DatabaseAmericanSub838C=0.900T=0.100
The Genome Aggregation DatabaseEast AsianSub1614C=0.800T=0.200
The Genome Aggregation DatabaseEuropeSub18498C=0.990T=0.009
The Genome Aggregation DatabaseGlobalStudy-wide29974C=0.956T=0.043
The Genome Aggregation DatabaseOtherSub302C=0.990T=0.010
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.943T=0.057
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.990T=0.010
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs24139137.42E-05alcohol dependence21314694

eQTL of rs2413913 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2413913 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr154901321949013990E0682170
chr154901321949013990E0722170
chr154901321949013990E0742170