rs2429862

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
C==0263 (7882/29868,GnomAD)
C==0319 (9300/29118,TOPMED)
C==0212 (1060/5008,1000G)
C==0286 (1104/3854,ALSPAC)
C==0276 (1025/3708,TWINSUK)
chr11:61612174 (GRCh38.p7) (11q12.2)
AD
GWASdb2
1   publication(s)
See rs on genome
8 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.61612174C>T
GRCh37.p13 chr 11NC_000011.9:g.61379646C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.362T=0.638
1000GenomesAmericanSub694C=0.190T=0.810
1000GenomesEast AsianSub1008C=0.050T=0.950
1000GenomesEuropeSub1006C=0.262T=0.738
1000GenomesGlobalStudy-wide5008C=0.212T=0.788
1000GenomesSouth AsianSub978C=0.140T=0.860
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.286T=0.714
The Genome Aggregation DatabaseAfricanSub8682C=0.378T=0.622
The Genome Aggregation DatabaseAmericanSub838C=0.190T=0.810
The Genome Aggregation DatabaseEast AsianSub1616C=0.053T=0.947
The Genome Aggregation DatabaseEuropeSub18430C=0.229T=0.770
The Genome Aggregation DatabaseGlobalStudy-wide29868C=0.263T=0.736
The Genome Aggregation DatabaseOtherSub302C=0.410T=0.590
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.319T=0.680
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.276T=0.724
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs24298620.00023alcohol dependence20201924

eQTL of rs2429862 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2429862 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr116134049061340573E067-39073
chr116137017261371213E067-8433
chr116133865261338891E068-40755
chr116133890361339021E068-40625
chr116134049061340573E068-39073
chr116134069361340772E068-38874
chr116134358461343667E068-35979
chr116134444661344602E068-35044
chr116134463961344796E068-34850
chr116134492761345063E068-34583
chr116134506761345186E068-34460
chr116134521061346042E068-33604
chr116136563961365733E068-13913
chr116136640861366688E068-12958
chr116136671261367500E068-12146
chr116139745161397541E06817805
chr116139754461397902E06817898
chr116140407761404167E06824431
chr116140425661404416E06824610
chr116140572361406210E06826077
chr116134049061340573E069-39073
chr116134069361340772E069-38874
chr116134220361342448E069-37198
chr116134521061346042E069-33604
chr116137017261371213E069-8433
chr116139745161397541E06917805
chr116139754461397902E06917898
chr116140407761404167E06924431
chr116140425661404416E06924610
chr116140466861405097E06925022
chr116133995861340008E070-39638
chr116142515261425293E07045506
chr116142549261425542E07045846
chr116142558861425628E07045942
chr116142650761426635E07046861
chr116142668561426906E07047039
chr116142696661427216E07047320
chr116137017261371213E071-8433
chr116140425661404416E07124610
chr116140466861405097E07125022
chr116141275561412931E07133109
chr116142515261425293E07145506
chr116142549261425542E07145846
chr116142558861425628E07145942
chr116133241561332492E072-47154
chr116133249761332598E072-47048
chr116133572761335810E072-43836
chr116134358461343667E072-35979
chr116134369161343743E072-35903
chr116134375861343918E072-35728
chr116136275061363480E072-16166
chr116136357261363754E072-15892
chr116140407761404167E07224431
chr116140425661404416E07224610
chr116140466861405097E07225022
chr116133210361332195E073-47451
chr116133241561332492E073-47154
chr116133249761332598E073-47048
chr116133263961332725E073-46921
chr116133276261332872E073-46774
chr116133314861333214E073-46432
chr116133339561333465E073-46181
chr116133351561333570E073-46076
chr116133694861337066E073-42580
chr116133858161338631E073-41015
chr116133865261338891E073-40755
chr116133890361339021E073-40625
chr116133904561339135E073-40511
chr116133925161339634E073-40012
chr116133964861339719E073-39927
chr116133995861340008E073-39638
chr116134049061340573E073-39073
chr116134069361340772E073-38874
chr116134095961341031E073-38615
chr116134114961341463E073-38183
chr116134153061341645E073-38001
chr116134176261341806E073-37840
chr116134197161342023E073-37623
chr116134220361342448E073-37198
chr116134404561344169E073-35477
chr116134425461344314E073-35332
chr116134444661344602E073-35044
chr116134463961344796E073-34850
chr116134492761345063E073-34583
chr116134506761345186E073-34460
chr116136076361360960E073-18686
chr116136210261362330E073-17316
chr116136237761362454E073-17192
chr116136252761362683E073-16963
chr116136563961365733E073-13913
chr116136603661366295E073-13351
chr116140292261403054E07323276
chr116140425661404416E07324610
chr116136252761362683E074-16963
chr116140466861405097E07425022
chr116133241561332492E081-47154
chr116133249761332598E081-47048
chr116133263961332725E081-46921
chr116133276261332872E081-46774
chr116133314861333214E081-46432
chr116133339561333465E081-46181
chr116133351561333570E081-46076
chr116133394561333985E081-45661
chr116133730561337367E081-42279
chr116133741861337492E081-42154
chr116133758461337650E081-41996
chr116133865261338891E081-40755
chr116133890361339021E081-40625
chr116133904561339135E081-40511
chr116133925161339634E081-40012
chr116133964861339719E081-39927
chr116133995861340008E081-39638
chr116134049061340573E081-39073
chr116134069361340772E081-38874
chr116134095961341031E081-38615
chr116134114961341463E081-38183
chr116134153061341645E081-38001
chr116134176261341806E081-37840
chr116134197161342023E081-37623
chr116134220361342448E081-37198
chr116134358461343667E081-35979
chr116134369161343743E081-35903
chr116134375861343918E081-35728
chr116134404561344169E081-35477
chr116134425461344314E081-35332
chr116134492761345063E081-34583
chr116134506761345186E081-34460
chr116134521061346042E081-33604
chr116137681961377154E081-2492
chr116133241561332492E082-47154
chr116133249761332598E082-47048
chr116133434761334421E082-45225
chr116133741861337492E082-42154
chr116133758461337650E082-41996
chr116133858161338631E082-41015
chr116133865261338891E082-40755
chr116133890361339021E082-40625
chr116133904561339135E082-40511
chr116133925161339634E082-40012
chr116133964861339719E082-39927
chr116133995861340008E082-39638
chr116134049061340573E082-39073
chr116134069361340772E082-38874
chr116134220361342448E082-37198
chr116134358461343667E082-35979
chr116134444661344602E082-35044
chr116134463961344796E082-34850










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr116134642361349791E067-29855
chr116134642361349791E068-29855
chr116135423061356673E068-22973
chr116134642361349791E069-29855
chr116134642361349791E071-29855
chr116134642361349791E072-29855
chr116134642361349791E073-29855
chr116135423061356673E073-22973