Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 11 | NC_000011.10:g.61612174C>T |
GRCh37.p13 chr 11 | NC_000011.9:g.61379646C>T |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.362 | T=0.638 |
1000Genomes | American | Sub | 694 | C=0.190 | T=0.810 |
1000Genomes | East Asian | Sub | 1008 | C=0.050 | T=0.950 |
1000Genomes | Europe | Sub | 1006 | C=0.262 | T=0.738 |
1000Genomes | Global | Study-wide | 5008 | C=0.212 | T=0.788 |
1000Genomes | South Asian | Sub | 978 | C=0.140 | T=0.860 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.286 | T=0.714 |
The Genome Aggregation Database | African | Sub | 8682 | C=0.378 | T=0.622 |
The Genome Aggregation Database | American | Sub | 838 | C=0.190 | T=0.810 |
The Genome Aggregation Database | East Asian | Sub | 1616 | C=0.053 | T=0.947 |
The Genome Aggregation Database | Europe | Sub | 18430 | C=0.229 | T=0.770 |
The Genome Aggregation Database | Global | Study-wide | 29868 | C=0.263 | T=0.736 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.410 | T=0.590 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.319 | T=0.680 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.276 | T=0.724 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs2429862 | 0.00023 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr11 | 61340490 | 61340573 | E067 | -39073 |
chr11 | 61370172 | 61371213 | E067 | -8433 |
chr11 | 61338652 | 61338891 | E068 | -40755 |
chr11 | 61338903 | 61339021 | E068 | -40625 |
chr11 | 61340490 | 61340573 | E068 | -39073 |
chr11 | 61340693 | 61340772 | E068 | -38874 |
chr11 | 61343584 | 61343667 | E068 | -35979 |
chr11 | 61344446 | 61344602 | E068 | -35044 |
chr11 | 61344639 | 61344796 | E068 | -34850 |
chr11 | 61344927 | 61345063 | E068 | -34583 |
chr11 | 61345067 | 61345186 | E068 | -34460 |
chr11 | 61345210 | 61346042 | E068 | -33604 |
chr11 | 61365639 | 61365733 | E068 | -13913 |
chr11 | 61366408 | 61366688 | E068 | -12958 |
chr11 | 61366712 | 61367500 | E068 | -12146 |
chr11 | 61397451 | 61397541 | E068 | 17805 |
chr11 | 61397544 | 61397902 | E068 | 17898 |
chr11 | 61404077 | 61404167 | E068 | 24431 |
chr11 | 61404256 | 61404416 | E068 | 24610 |
chr11 | 61405723 | 61406210 | E068 | 26077 |
chr11 | 61340490 | 61340573 | E069 | -39073 |
chr11 | 61340693 | 61340772 | E069 | -38874 |
chr11 | 61342203 | 61342448 | E069 | -37198 |
chr11 | 61345210 | 61346042 | E069 | -33604 |
chr11 | 61370172 | 61371213 | E069 | -8433 |
chr11 | 61397451 | 61397541 | E069 | 17805 |
chr11 | 61397544 | 61397902 | E069 | 17898 |
chr11 | 61404077 | 61404167 | E069 | 24431 |
chr11 | 61404256 | 61404416 | E069 | 24610 |
chr11 | 61404668 | 61405097 | E069 | 25022 |
chr11 | 61339958 | 61340008 | E070 | -39638 |
chr11 | 61425152 | 61425293 | E070 | 45506 |
chr11 | 61425492 | 61425542 | E070 | 45846 |
chr11 | 61425588 | 61425628 | E070 | 45942 |
chr11 | 61426507 | 61426635 | E070 | 46861 |
chr11 | 61426685 | 61426906 | E070 | 47039 |
chr11 | 61426966 | 61427216 | E070 | 47320 |
chr11 | 61370172 | 61371213 | E071 | -8433 |
chr11 | 61404256 | 61404416 | E071 | 24610 |
chr11 | 61404668 | 61405097 | E071 | 25022 |
chr11 | 61412755 | 61412931 | E071 | 33109 |
chr11 | 61425152 | 61425293 | E071 | 45506 |
chr11 | 61425492 | 61425542 | E071 | 45846 |
chr11 | 61425588 | 61425628 | E071 | 45942 |
chr11 | 61332415 | 61332492 | E072 | -47154 |
chr11 | 61332497 | 61332598 | E072 | -47048 |
chr11 | 61335727 | 61335810 | E072 | -43836 |
chr11 | 61343584 | 61343667 | E072 | -35979 |
chr11 | 61343691 | 61343743 | E072 | -35903 |
chr11 | 61343758 | 61343918 | E072 | -35728 |
chr11 | 61362750 | 61363480 | E072 | -16166 |
chr11 | 61363572 | 61363754 | E072 | -15892 |
chr11 | 61404077 | 61404167 | E072 | 24431 |
chr11 | 61404256 | 61404416 | E072 | 24610 |
chr11 | 61404668 | 61405097 | E072 | 25022 |
chr11 | 61332103 | 61332195 | E073 | -47451 |
chr11 | 61332415 | 61332492 | E073 | -47154 |
chr11 | 61332497 | 61332598 | E073 | -47048 |
chr11 | 61332639 | 61332725 | E073 | -46921 |
chr11 | 61332762 | 61332872 | E073 | -46774 |
chr11 | 61333148 | 61333214 | E073 | -46432 |
chr11 | 61333395 | 61333465 | E073 | -46181 |
chr11 | 61333515 | 61333570 | E073 | -46076 |
chr11 | 61336948 | 61337066 | E073 | -42580 |
chr11 | 61338581 | 61338631 | E073 | -41015 |
chr11 | 61338652 | 61338891 | E073 | -40755 |
chr11 | 61338903 | 61339021 | E073 | -40625 |
chr11 | 61339045 | 61339135 | E073 | -40511 |
chr11 | 61339251 | 61339634 | E073 | -40012 |
chr11 | 61339648 | 61339719 | E073 | -39927 |
chr11 | 61339958 | 61340008 | E073 | -39638 |
chr11 | 61340490 | 61340573 | E073 | -39073 |
chr11 | 61340693 | 61340772 | E073 | -38874 |
chr11 | 61340959 | 61341031 | E073 | -38615 |
chr11 | 61341149 | 61341463 | E073 | -38183 |
chr11 | 61341530 | 61341645 | E073 | -38001 |
chr11 | 61341762 | 61341806 | E073 | -37840 |
chr11 | 61341971 | 61342023 | E073 | -37623 |
chr11 | 61342203 | 61342448 | E073 | -37198 |
chr11 | 61344045 | 61344169 | E073 | -35477 |
chr11 | 61344254 | 61344314 | E073 | -35332 |
chr11 | 61344446 | 61344602 | E073 | -35044 |
chr11 | 61344639 | 61344796 | E073 | -34850 |
chr11 | 61344927 | 61345063 | E073 | -34583 |
chr11 | 61345067 | 61345186 | E073 | -34460 |
chr11 | 61360763 | 61360960 | E073 | -18686 |
chr11 | 61362102 | 61362330 | E073 | -17316 |
chr11 | 61362377 | 61362454 | E073 | -17192 |
chr11 | 61362527 | 61362683 | E073 | -16963 |
chr11 | 61365639 | 61365733 | E073 | -13913 |
chr11 | 61366036 | 61366295 | E073 | -13351 |
chr11 | 61402922 | 61403054 | E073 | 23276 |
chr11 | 61404256 | 61404416 | E073 | 24610 |
chr11 | 61362527 | 61362683 | E074 | -16963 |
chr11 | 61404668 | 61405097 | E074 | 25022 |
chr11 | 61332415 | 61332492 | E081 | -47154 |
chr11 | 61332497 | 61332598 | E081 | -47048 |
chr11 | 61332639 | 61332725 | E081 | -46921 |
chr11 | 61332762 | 61332872 | E081 | -46774 |
chr11 | 61333148 | 61333214 | E081 | -46432 |
chr11 | 61333395 | 61333465 | E081 | -46181 |
chr11 | 61333515 | 61333570 | E081 | -46076 |
chr11 | 61333945 | 61333985 | E081 | -45661 |
chr11 | 61337305 | 61337367 | E081 | -42279 |
chr11 | 61337418 | 61337492 | E081 | -42154 |
chr11 | 61337584 | 61337650 | E081 | -41996 |
chr11 | 61338652 | 61338891 | E081 | -40755 |
chr11 | 61338903 | 61339021 | E081 | -40625 |
chr11 | 61339045 | 61339135 | E081 | -40511 |
chr11 | 61339251 | 61339634 | E081 | -40012 |
chr11 | 61339648 | 61339719 | E081 | -39927 |
chr11 | 61339958 | 61340008 | E081 | -39638 |
chr11 | 61340490 | 61340573 | E081 | -39073 |
chr11 | 61340693 | 61340772 | E081 | -38874 |
chr11 | 61340959 | 61341031 | E081 | -38615 |
chr11 | 61341149 | 61341463 | E081 | -38183 |
chr11 | 61341530 | 61341645 | E081 | -38001 |
chr11 | 61341762 | 61341806 | E081 | -37840 |
chr11 | 61341971 | 61342023 | E081 | -37623 |
chr11 | 61342203 | 61342448 | E081 | -37198 |
chr11 | 61343584 | 61343667 | E081 | -35979 |
chr11 | 61343691 | 61343743 | E081 | -35903 |
chr11 | 61343758 | 61343918 | E081 | -35728 |
chr11 | 61344045 | 61344169 | E081 | -35477 |
chr11 | 61344254 | 61344314 | E081 | -35332 |
chr11 | 61344927 | 61345063 | E081 | -34583 |
chr11 | 61345067 | 61345186 | E081 | -34460 |
chr11 | 61345210 | 61346042 | E081 | -33604 |
chr11 | 61376819 | 61377154 | E081 | -2492 |
chr11 | 61332415 | 61332492 | E082 | -47154 |
chr11 | 61332497 | 61332598 | E082 | -47048 |
chr11 | 61334347 | 61334421 | E082 | -45225 |
chr11 | 61337418 | 61337492 | E082 | -42154 |
chr11 | 61337584 | 61337650 | E082 | -41996 |
chr11 | 61338581 | 61338631 | E082 | -41015 |
chr11 | 61338652 | 61338891 | E082 | -40755 |
chr11 | 61338903 | 61339021 | E082 | -40625 |
chr11 | 61339045 | 61339135 | E082 | -40511 |
chr11 | 61339251 | 61339634 | E082 | -40012 |
chr11 | 61339648 | 61339719 | E082 | -39927 |
chr11 | 61339958 | 61340008 | E082 | -39638 |
chr11 | 61340490 | 61340573 | E082 | -39073 |
chr11 | 61340693 | 61340772 | E082 | -38874 |
chr11 | 61342203 | 61342448 | E082 | -37198 |
chr11 | 61343584 | 61343667 | E082 | -35979 |
chr11 | 61344446 | 61344602 | E082 | -35044 |
chr11 | 61344639 | 61344796 | E082 | -34850 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr11 | 61346423 | 61349791 | E067 | -29855 |
chr11 | 61346423 | 61349791 | E068 | -29855 |
chr11 | 61354230 | 61356673 | E068 | -22973 |
chr11 | 61346423 | 61349791 | E069 | -29855 |
chr11 | 61346423 | 61349791 | E071 | -29855 |
chr11 | 61346423 | 61349791 | E072 | -29855 |
chr11 | 61346423 | 61349791 | E073 | -29855 |
chr11 | 61354230 | 61356673 | E073 | -22973 |