Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 6 | NC_000006.12:g.149000610C>T |
GRCh37.p13 chr 6 | NC_000006.11:g.149321746C>T |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
UST transcript | NM_005715.2:c. | N/A | Intron Variant |
UST transcript variant X2 | XM_011535378.2:c. | N/A | Intron Variant |
UST transcript variant X3 | XM_017010152.1:c. | N/A | Genic Downstream Transcript Variant |
UST transcript variant X1 | XR_001743088.1:n. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.072 | T=0.928 |
1000Genomes | American | Sub | 694 | C=0.240 | T=0.760 |
1000Genomes | East Asian | Sub | 1008 | C=0.251 | T=0.749 |
1000Genomes | Europe | Sub | 1006 | C=0.036 | T=0.964 |
1000Genomes | Global | Study-wide | 5008 | C=0.123 | T=0.877 |
1000Genomes | South Asian | Sub | 978 | C=0.060 | T=0.940 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.056 | T=0.944 |
The Genome Aggregation Database | African | Sub | 8732 | C=0.065 | T=0.935 |
The Genome Aggregation Database | American | Sub | 832 | C=0.280 | T=0.720 |
The Genome Aggregation Database | East Asian | Sub | 1600 | C=0.240 | T=0.760 |
The Genome Aggregation Database | Europe | Sub | 18498 | C=0.049 | T=0.951 |
The Genome Aggregation Database | Global | Study-wide | 29964 | C=0.070 | T=0.929 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.090 | T=0.910 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.071 | T=0.928 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.047 | T=0.953 |
PMID | Title | Author | Journal |
---|---|---|---|
21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs2486396 | 0.000494 | alcohol dependence | 21314694 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr6 | 149334567 | 149335019 | E067 | 12821 |
chr6 | 149335151 | 149336852 | E067 | 13405 |
chr6 | 149349570 | 149350427 | E067 | 27824 |
chr6 | 149367803 | 149368392 | E067 | 46057 |
chr6 | 149289235 | 149289326 | E068 | -32420 |
chr6 | 149289349 | 149289761 | E068 | -31985 |
chr6 | 149289811 | 149291418 | E068 | -30328 |
chr6 | 149334567 | 149335019 | E068 | 12821 |
chr6 | 149335151 | 149336852 | E068 | 13405 |
chr6 | 149349570 | 149350427 | E068 | 27824 |
chr6 | 149353118 | 149354530 | E068 | 31372 |
chr6 | 149354569 | 149354676 | E068 | 32823 |
chr6 | 149354965 | 149355053 | E068 | 33219 |
chr6 | 149288137 | 149289186 | E069 | -32560 |
chr6 | 149289235 | 149289326 | E069 | -32420 |
chr6 | 149289349 | 149289761 | E069 | -31985 |
chr6 | 149311892 | 149312125 | E069 | -9621 |
chr6 | 149275779 | 149275852 | E070 | -45894 |
chr6 | 149275858 | 149275917 | E070 | -45829 |
chr6 | 149276111 | 149276351 | E070 | -45395 |
chr6 | 149276443 | 149276976 | E070 | -44770 |
chr6 | 149288137 | 149289186 | E070 | -32560 |
chr6 | 149289235 | 149289326 | E070 | -32420 |
chr6 | 149289349 | 149289761 | E070 | -31985 |
chr6 | 149310067 | 149310145 | E070 | -11601 |
chr6 | 149310225 | 149310299 | E070 | -11447 |
chr6 | 149310448 | 149310516 | E070 | -11230 |
chr6 | 149289349 | 149289761 | E071 | -31985 |
chr6 | 149310067 | 149310145 | E071 | -11601 |
chr6 | 149310225 | 149310299 | E071 | -11447 |
chr6 | 149310448 | 149310516 | E071 | -11230 |
chr6 | 149319954 | 149320141 | E071 | -1605 |
chr6 | 149320201 | 149320322 | E071 | -1424 |
chr6 | 149320374 | 149320459 | E071 | -1287 |
chr6 | 149320544 | 149321806 | E071 | 0 |
chr6 | 149335151 | 149336852 | E071 | 13405 |
chr6 | 149341174 | 149341226 | E071 | 19428 |
chr6 | 149353118 | 149354530 | E071 | 31372 |
chr6 | 149354569 | 149354676 | E071 | 32823 |
chr6 | 149354965 | 149355053 | E071 | 33219 |
chr6 | 149366951 | 149367037 | E071 | 45205 |
chr6 | 149367278 | 149367683 | E071 | 45532 |
chr6 | 149289235 | 149289326 | E072 | -32420 |
chr6 | 149289349 | 149289761 | E072 | -31985 |
chr6 | 149353021 | 149353105 | E072 | 31275 |
chr6 | 149353118 | 149354530 | E072 | 31372 |
chr6 | 149288137 | 149289186 | E073 | -32560 |
chr6 | 149289235 | 149289326 | E073 | -32420 |
chr6 | 149289349 | 149289761 | E073 | -31985 |
chr6 | 149335151 | 149336852 | E073 | 13405 |
chr6 | 149365283 | 149365427 | E073 | 43537 |
chr6 | 149365510 | 149366166 | E073 | 43764 |
chr6 | 149288137 | 149289186 | E074 | -32560 |
chr6 | 149295023 | 149295362 | E074 | -26384 |
chr6 | 149295525 | 149295610 | E074 | -26136 |
chr6 | 149295647 | 149295724 | E074 | -26022 |
chr6 | 149295815 | 149295865 | E074 | -25881 |
chr6 | 149320544 | 149321806 | E074 | 0 |
chr6 | 149349570 | 149350427 | E074 | 27824 |
chr6 | 149353118 | 149354530 | E074 | 31372 |
chr6 | 149367278 | 149367683 | E074 | 45532 |
chr6 | 149288137 | 149289186 | E081 | -32560 |
chr6 | 149289235 | 149289326 | E081 | -32420 |
chr6 | 149289349 | 149289761 | E081 | -31985 |
chr6 | 149334164 | 149334263 | E081 | 12418 |
chr6 | 149334567 | 149335019 | E081 | 12821 |
chr6 | 149335151 | 149336852 | E081 | 13405 |
chr6 | 149357657 | 149357834 | E081 | 35911 |
chr6 | 149357977 | 149358069 | E081 | 36231 |
chr6 | 149358101 | 149358821 | E081 | 36355 |
chr6 | 149288137 | 149289186 | E082 | -32560 |
chr6 | 149334567 | 149335019 | E082 | 12821 |
chr6 | 149335151 | 149336852 | E082 | 13405 |