Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 10 | NC_000010.11:g.117292277G>A |
GRCh37.p13 chr 10 | NC_000010.10:g.119051788G>A |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
PDZD8 transcript | NM_173791.4:c. | N/A | Intron Variant |
PDZD8 transcript variant X1 | XM_005269518.3:c. | N/A | Intron Variant |
PDZD8 transcript variant X4 | XM_011539265.1:c. | N/A | Intron Variant |
PDZD8 transcript variant X5 | XM_011539266.2:c. | N/A | Genic Downstream Transcript Variant |
PDZD8 transcript variant X2 | XR_945601.1:n. | N/A | Intron Variant |
PDZD8 transcript variant X3 | XR_945602.1:n. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.891 | A=0.109 |
1000Genomes | American | Sub | 694 | G=0.950 | A=0.050 |
1000Genomes | East Asian | Sub | 1008 | G=0.986 | A=0.014 |
1000Genomes | Europe | Sub | 1006 | G=0.951 | A=0.049 |
1000Genomes | Global | Study-wide | 5008 | G=0.938 | A=0.062 |
1000Genomes | South Asian | Sub | 978 | G=0.930 | A=0.070 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.948 | A=0.052 |
The Genome Aggregation Database | African | Sub | 8716 | G=0.894 | A=0.106 |
The Genome Aggregation Database | American | Sub | 838 | G=0.970 | A=0.030 |
The Genome Aggregation Database | East Asian | Sub | 1622 | G=0.993 | A=0.007 |
The Genome Aggregation Database | Europe | Sub | 18496 | G=0.946 | A=0.053 |
The Genome Aggregation Database | Global | Study-wide | 29974 | G=0.933 | A=0.066 |
The Genome Aggregation Database | Other | Sub | 302 | G=0.890 | A=0.110 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.924 | A=0.075 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.941 | A=0.059 |
PMID | Title | Author | Journal |
---|---|---|---|
21703634 | A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence. | Wang KS | J Psychiatr Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs2532812 | 3.63E-05 | alcohol dependence | 21703634 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr10 | 119042579 | 119042633 | E067 | -9155 |
chr10 | 119042733 | 119042823 | E067 | -8965 |
chr10 | 119081834 | 119081905 | E067 | 30046 |
chr10 | 119081928 | 119082035 | E067 | 30140 |
chr10 | 119042733 | 119042823 | E068 | -8965 |
chr10 | 119043292 | 119043373 | E068 | -8415 |
chr10 | 119043503 | 119043754 | E068 | -8034 |
chr10 | 119043775 | 119043825 | E068 | -7963 |
chr10 | 119043292 | 119043373 | E069 | -8415 |
chr10 | 119081834 | 119081905 | E069 | 30046 |
chr10 | 119005189 | 119005279 | E070 | -46509 |
chr10 | 119005287 | 119005380 | E070 | -46408 |
chr10 | 119005909 | 119005959 | E070 | -45829 |
chr10 | 119011871 | 119012094 | E070 | -39694 |
chr10 | 119012470 | 119012529 | E070 | -39259 |
chr10 | 119012624 | 119012688 | E070 | -39100 |
chr10 | 119012891 | 119012962 | E070 | -38826 |
chr10 | 119018524 | 119018574 | E070 | -33214 |
chr10 | 119018588 | 119018687 | E070 | -33101 |
chr10 | 119018787 | 119019100 | E070 | -32688 |
chr10 | 119019157 | 119019269 | E070 | -32519 |
chr10 | 119042579 | 119042633 | E070 | -9155 |
chr10 | 119042733 | 119042823 | E070 | -8965 |
chr10 | 119051371 | 119051411 | E070 | -377 |
chr10 | 119051475 | 119051626 | E070 | -162 |
chr10 | 119042733 | 119042823 | E071 | -8965 |
chr10 | 119043292 | 119043373 | E071 | -8415 |
chr10 | 119081623 | 119081673 | E071 | 29835 |
chr10 | 119081720 | 119081790 | E071 | 29932 |
chr10 | 119081834 | 119081905 | E071 | 30046 |
chr10 | 119081928 | 119082035 | E071 | 30140 |
chr10 | 119042579 | 119042633 | E072 | -9155 |
chr10 | 119042733 | 119042823 | E072 | -8965 |
chr10 | 119043292 | 119043373 | E072 | -8415 |
chr10 | 119081834 | 119081905 | E072 | 30046 |
chr10 | 119081834 | 119081905 | E073 | 30046 |
chr10 | 119081928 | 119082035 | E073 | 30140 |
chr10 | 119042579 | 119042633 | E074 | -9155 |
chr10 | 119042733 | 119042823 | E074 | -8965 |
chr10 | 119043292 | 119043373 | E074 | -8415 |