SNP Detail Info-rs2535483

Organism: Homo sapiens

Alleles: C>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

T=0395 (11815/29890,GnomAD)
T=0484 (14094/29118,TOPMED)
T=0457 (2288/5008,1000G)
T=0243 (936/3854,ALSPAC)
T=0244 (906/3708,TWINSUK)

Position: chr15:97013682 (GRCh38.p7) (15q26.2)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 4 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 15	NC_000015.10:g.97013682C>T
GRCh37.p13 chr 15	NC_000015.9:g.97556912C>T

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.179	T=0.821
1000Genomes	American	Sub	694	C=0.610	T=0.390
1000Genomes	East Asian	Sub	1008	C=0.644	T=0.356
1000Genomes	Europe	Sub	1006	C=0.760	T=0.240
1000Genomes	Global	Study-wide	5008	C=0.543	T=0.457
1000Genomes	South Asian	Sub	978	C=0.660	T=0.340
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.757	T=0.243
The Genome Aggregation Database	African	Sub	8702	C=0.251	T=0.749
The Genome Aggregation Database	American	Sub	836	C=0.610	T=0.390
The Genome Aggregation Database	East Asian	Sub	1596	C=0.654	T=0.346
The Genome Aggregation Database	Europe	Sub	18454	C=0.765	T=0.234
The Genome Aggregation Database	Global	Study-wide	29890	C=0.604	T=0.395
The Genome Aggregation Database	Other	Sub	302	C=0.700	T=0.300
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.516	T=0.484
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.756	T=0.244

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr15	97512614	97512664	E070	-44248
chr15	97512716	97512795	E070	-44117
chr15	97512918	97513272	E070	-43640
chr15	97513305	97513405	E081	-43507

rs2535483