SNP Detail Info-rs2582662

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0431 (12917/29934,GnomAD)
G==0467 (13608/29118,TOPMED)
A=0447 (2239/5008,1000G)
G==0383 (1476/3854,ALSPAC)
G==0359 (1330/3708,TWINSUK)

Position: chr5:16272528 (GRCh38.p7) (5p15.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 5	NC_000005.10:g.16272528G>A
GRCh37.p13 chr 5	NC_000005.9:g.16272637G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.601	A=0.399
1000Genomes	American	Sub	694	G=0.560	A=0.440
1000Genomes	East Asian	Sub	1008	G=0.812	A=0.188
1000Genomes	Europe	Sub	1006	G=0.356	A=0.644
1000Genomes	Global	Study-wide	5008	G=0.553	A=0.447
1000Genomes	South Asian	Sub	978	G=0.420	A=0.580
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.383	A=0.617
The Genome Aggregation Database	African	Sub	8716	G=0.568	A=0.432
The Genome Aggregation Database	American	Sub	836	G=0.580	A=0.420
The Genome Aggregation Database	East Asian	Sub	1614	G=0.813	A=0.187
The Genome Aggregation Database	Europe	Sub	18468	G=0.327	A=0.672
The Genome Aggregation Database	Global	Study-wide	29934	G=0.431	A=0.568
The Genome Aggregation Database	Other	Sub	300	G=0.390	A=0.610
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.467	A=0.532
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.359	A=0.641

PMID	Title	Author	Journal
21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Heath AC	Biol Psychiatry

SNP ID	p-value	Traits	Study
rs2582662	2.6E-05	alcoholism (heaviness of drinking)	21529783

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs2582662