| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 12 | NC_000012.12:g.27880569A>G |
| GRCh37.p13 chr 12 | NC_000012.11:g.28033502A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.461 | G=0.539 |
| 1000Genomes | American | Sub | 694 | A=0.410 | G=0.590 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.584 | G=0.416 |
| 1000Genomes | Europe | Sub | 1006 | A=0.422 | G=0.578 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.490 | G=0.510 |
| 1000Genomes | South Asian | Sub | 978 | A=0.560 | G=0.440 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.438 | G=0.562 |
| The Genome Aggregation Database | African | Sub | 8592 | A=0.478 | G=0.522 |
| The Genome Aggregation Database | American | Sub | 746 | A=0.360 | G=0.640 |
| The Genome Aggregation Database | East Asian | Sub | 1608 | A=0.606 | G=0.394 |
| The Genome Aggregation Database | Europe | Sub | 17664 | A=0.403 | G=0.596 |
| The Genome Aggregation Database | Global | Study-wide | 28906 | A=0.436 | G=0.563 |
| The Genome Aggregation Database | Other | Sub | 296 | A=0.460 | G=0.540 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.440 | G=0.559 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.438 | G=0.562 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 28040410 | A genome wide association study of fast beta EEG in families of European ancestry. | Meyers JL | Int J Psychophysiol |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs258430 | 6E-07 | alcohol dependence | 28040410 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr12 | 27991458 | 27992042 | E067 | -41460 |
| chr12 | 27992158 | 27992227 | E067 | -41275 |
| chr12 | 27991458 | 27992042 | E069 | -41460 |
| chr12 | 27992158 | 27992227 | E069 | -41275 |
| chr12 | 27992487 | 27992527 | E069 | -40975 |
| chr12 | 28066985 | 28067039 | E070 | 33483 |
| chr12 | 28067074 | 28067199 | E070 | 33572 |
| chr12 | 27991260 | 27991388 | E071 | -42114 |
| chr12 | 27991458 | 27992042 | E071 | -41460 |
| chr12 | 27992158 | 27992227 | E071 | -41275 |
| chr12 | 27991260 | 27991388 | E073 | -42114 |
| chr12 | 27991458 | 27992042 | E073 | -41460 |
| chr12 | 27991260 | 27991388 | E074 | -42114 |
| chr12 | 27991458 | 27992042 | E074 | -41460 |
| chr12 | 28021995 | 28022138 | E081 | -11364 |
| chr12 | 28022391 | 28022560 | E081 | -10942 |
| chr12 | 28022631 | 28022883 | E081 | -10619 |
| chr12 | 28022892 | 28023012 | E081 | -10490 |
| chr12 | 28023235 | 28023300 | E081 | -10202 |
| chr12 | 28023761 | 28023857 | E081 | -9645 |
| chr12 | 28023969 | 28024208 | E081 | -9294 |
| chr12 | 28051758 | 28052738 | E081 | 18256 |
| chr12 | 28062490 | 28062540 | E081 | 28988 |
| chr12 | 28066197 | 28066351 | E081 | 32695 |
| chr12 | 28022391 | 28022560 | E082 | -10942 |
| chr12 | 28022631 | 28022883 | E082 | -10619 |
| chr12 | 28022892 | 28023012 | E082 | -10490 |
| chr12 | 28023235 | 28023300 | E082 | -10202 |
| chr12 | 28051758 | 28052738 | E082 | 18256 |
| chr12 | 28052796 | 28052989 | E082 | 19294 |