SNP Detail Info-rs2595211

Molecule type	Change	Amino acid[Codon]	SO Term
PRKCE transcript	NM_005400.2:c.	N/A	Intron Variant
PRKCE transcript variant X1	XM_005264428.1:c.	N/A	Intron Variant
PRKCE transcript variant X14	XM_005264431.3:c.	N/A	Intron Variant
PRKCE transcript variant X3	XM_011532971.2:c.	N/A	Intron Variant
PRKCE transcript variant X4	XM_011532975.2:c.	N/A	Intron Variant
PRKCE transcript variant X6	XM_011532978.1:c.	N/A	Intron Variant
PRKCE transcript variant X10	XM_011532980.2:c.	N/A	Intron Variant
PRKCE transcript variant X12	XM_011532981.2:c.	N/A	Intron Variant
PRKCE transcript variant X13	XM_011532982.1:c.	N/A	Intron Variant
PRKCE transcript variant X2	XM_017004486.1:c.	N/A	Intron Variant
PRKCE transcript variant X5	XM_017004487.1:c.	N/A	Intron Variant
PRKCE transcript variant X7	XM_017004488.1:c.	N/A	Intron Variant
PRKCE transcript variant X8	XM_017004489.1:c.	N/A	Intron Variant
PRKCE transcript variant X9	XM_017004490.1:c.	N/A	Intron Variant
PRKCE transcript variant X11	XM_017004491.1:c.	N/A	Intron Variant
PRKCE transcript variant X15	XM_017004492.1:c.	N/A	Intron Variant
PRKCE transcript variant X19	XM_006712050.3:c.	N/A	Genic Upstream Transcript Variant
PRKCE transcript variant X20	XM_011532983.2:c.	N/A	Genic Upstream Transcript Variant
PRKCE transcript variant X19	XR_001738846.1:n.	N/A	Intron Variant
PRKCE transcript variant X18	XR_939695.2:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.971	G=0.029
1000Genomes	American	Sub	694	T=0.590	G=0.410
1000Genomes	East Asian	Sub	1008	T=0.408	G=0.592
1000Genomes	Europe	Sub	1006	T=0.786	G=0.214
1000Genomes	Global	Study-wide	5008	T=0.736	G=0.264
1000Genomes	South Asian	Sub	978	T=0.800	G=0.200
The Genome Aggregation Database	African	Sub	8722	T=0.935	G=0.065
The Genome Aggregation Database	American	Sub	838	T=0.510	G=0.490
The Genome Aggregation Database	East Asian	Sub	1618	T=0.453	G=0.547
The Genome Aggregation Database	Europe	Sub	18462	T=0.755	G=0.244
The Genome Aggregation Database	Global	Study-wide	29942	T=0.785	G=0.214
The Genome Aggregation Database	Other	Sub	302	T=0.840	G=0.160
Trans-Omics for Precision Medicine	Global	Study-wide	29116	T=0.828	G=0.171

PMID	Title	Author	Journal
17158188	Novel genes identified in a high-density genome wide association study for nicotine dependence.	Bierut LJ	Hum Mol Genet

SNP ID	p-value	Traits	Study
rs2595211	0.000902	nicotine dependence	17158188

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr2	130197005	130197635	E070	-4351
chr2	130248271	130248515	E071	46285
chr2	130248798	130248888	E071	46812
chr2	130185920	130186058	E081	-15928
chr2	130194530	130194810	E081	-7176
chr2	130195124	130195211	E081	-6775
chr2	130195420	130195691	E081	-6295
chr2	130195925	130196610	E081	-5376
chr2	130197005	130197635	E081	-4351
chr2	130201651	130201724	E081	-262
chr2	130202067	130202132	E081	81
chr2	130227521	130227727	E081	25535
chr2	130236485	130237093	E081	34499
chr2	130237339	130237412	E081	35353
chr2	130237562	130237687	E081	35576
chr2	130248271	130248515	E081	46285
chr2	130248798	130248888	E081	46812
chr2	130250250	130250419	E081	48264
chr2	130154789	130155073	E082	-46913
chr2	130158519	130158674	E082	-43312
chr2	130158744	130158864	E082	-43122
chr2	130185920	130186058	E082	-15928
chr2	130194530	130194810	E082	-7176
chr2	130195124	130195211	E082	-6775
chr2	130195420	130195691	E082	-6295
chr2	130195925	130196610	E082	-5376
chr2	130197005	130197635	E082	-4351
chr2	130201651	130201724	E082	-262
chr2	130202067	130202132	E082	81
chr2	130227521	130227727	E082	25535
chr2	130236485	130237093	E082	34499
chr2	130237339	130237412	E082	35353
chr2	130237562	130237687	E082	35576
chr2	130248271	130248515	E082	46285
chr2	130250250	130250419	E082	48264

rs2595211