| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 3 | NC_000003.12:g.102172051G>A |
| GRCh37.p13 chr 3 | NC_000003.11:g.101890895G>A |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | G=0.573 | A=0.427 |
| 1000Genomes | American | Sub | 694 | G=0.420 | A=0.580 |
| 1000Genomes | East Asian | Sub | 1008 | G=0.462 | A=0.538 |
| 1000Genomes | Europe | Sub | 1006 | G=0.620 | A=0.380 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.544 | A=0.456 |
| 1000Genomes | South Asian | Sub | 978 | G=0.600 | A=0.400 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.610 | A=0.390 |
| The Genome Aggregation Database | African | Sub | 8714 | G=0.583 | A=0.417 |
| The Genome Aggregation Database | American | Sub | 832 | G=0.460 | A=0.540 |
| The Genome Aggregation Database | East Asian | Sub | 1616 | G=0.453 | A=0.547 |
| The Genome Aggregation Database | Europe | Sub | 18448 | G=0.601 | A=0.398 |
| The Genome Aggregation Database | Global | Study-wide | 29912 | G=0.584 | A=0.415 |
| The Genome Aggregation Database | Other | Sub | 302 | G=0.570 | A=0.430 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.589 | A=0.410 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.584 | A=0.416 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 19268276 | Genome-wide association study of smoking initiation and current smoking. | Vink JM | Am J Hum Genet |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs2619283 | 0.000992 | nicotine smoking | 19268276 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr3 | 101861359 | 101861470 | E071 | -29425 |
| chr3 | 101861657 | 101861739 | E071 | -29156 |
| chr3 | 101881611 | 101881667 | E071 | -9228 |
| chr3 | 101881737 | 101882874 | E071 | -8021 |
| chr3 | 101897967 | 101898120 | E071 | 7072 |
| chr3 | 101899905 | 101899974 | E071 | 9010 |
| chr3 | 101924983 | 101925904 | E071 | 34088 |
| chr3 | 101924983 | 101925904 | E081 | 34088 |