rs263930

Homo sapiens
C>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0287 (8622/29950,GnomAD)
G=0249 (7278/29118,TOPMED)
G=0329 (1647/5008,1000G)
G=0321 (1239/3854,ALSPAC)
G=0325 (1205/3708,TWINSUK)
chr13:21664523 (GRCh38.p7) (13q12.11)
ND
GWASdb2
1   publication(s)
See rs on genome
15 Enhancers around
26 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.21664523C>G
GRCh37.p13 chr 13NC_000013.10:g.22238662C>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.942G=0.058
1000GenomesAmericanSub694C=0.480G=0.520
1000GenomesEast AsianSub1008C=0.510G=0.490
1000GenomesEuropeSub1006C=0.637G=0.363
1000GenomesGlobalStudy-wide5008C=0.671G=0.329
1000GenomesSouth AsianSub978C=0.640G=0.360
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.679G=0.321
The Genome Aggregation DatabaseAfricanSub8724C=0.906G=0.094
The Genome Aggregation DatabaseAmericanSub834C=0.490G=0.510
The Genome Aggregation DatabaseEast AsianSub1612C=0.542G=0.458
The Genome Aggregation DatabaseEuropeSub18478C=0.645G=0.354
The Genome Aggregation DatabaseGlobalStudy-wide29950C=0.712G=0.287
The Genome Aggregation DatabaseOtherSub302C=0.690G=0.310
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.750G=0.249
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.675G=0.325
PMID Title Author Journal
19268276Genome-wide association study of smoking initiation and current smoking.Vink JMAm J Hum Genet

P-Value

SNP ID p-value Traits Study
rs2639304.33E-05nicotine smoking19268276

eQTL of rs263930 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs263930 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr132221379322214279E068-24383
chr132221454122214645E068-24017
chr132221356122213789E070-24873
chr132221379322214279E070-24383
chr132225056222251530E07011900
chr132225056222251530E07311900
chr132225153322251636E07312871
chr132221454122214645E081-24017
chr132225056222251530E08111900
chr132225153322251636E08112871
chr132227562222275928E08136960
chr132225056222251530E08211900
chr132225153322251636E08212871
chr132225165922251737E08212997
chr132225177122251924E08213109





Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr132224274022246550E0674078
chr132224659922249138E0677937
chr132224920322250337E06710541
chr132224274022246550E0684078
chr132224659922249138E0687937
chr132224274022246550E0694078
chr132224659922249138E0697937
chr132224920322250337E06910541
chr132224274022246550E0704078
chr132224659922249138E0707937
chr132224920322250337E07010541
chr132224274022246550E0714078
chr132224659922249138E0717937
chr132224920322250337E07110541
chr132224274022246550E0724078
chr132224659922249138E0727937
chr132224920322250337E07210541
chr132224274022246550E0734078
chr132224659922249138E0737937
chr132224920322250337E07310541
chr132224274022246550E0744078
chr132224659922249138E0747937
chr132224274022246550E0814078
chr132224659922249138E0817937
chr132224274022246550E0824078
chr132224920322250337E08210541