SNP Detail Info-rs2666055

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0100 (3004/29946,GnomAD)
G==0107 (3143/29118,TOPMED)
G==0092 (463/5008,1000G)
G==0119 (458/3854,ALSPAC)
G==0119 (441/3708,TWINSUK)

Position: chr4:178423266 (GRCh38.p7) (4q34.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 20 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 4	NC_000004.12:g.178423266G>A
GRCh37.p13 chr 4	NC_000004.11:g.179344420G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.107	A=0.893
1000Genomes	American	Sub	694	G=0.070	A=0.930
1000Genomes	East Asian	Sub	1008	G=0.064	A=0.936
1000Genomes	Europe	Sub	1006	G=0.095	A=0.905
1000Genomes	Global	Study-wide	5008	G=0.092	A=0.908
1000Genomes	South Asian	Sub	978	G=0.110	A=0.890
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.119	A=0.881
The Genome Aggregation Database	African	Sub	8706	G=0.101	A=0.899
The Genome Aggregation Database	American	Sub	836	G=0.060	A=0.940
The Genome Aggregation Database	East Asian	Sub	1612	G=0.058	A=0.942
The Genome Aggregation Database	Europe	Sub	18490	G=0.105	A=0.894
The Genome Aggregation Database	Global	Study-wide	29946	G=0.100	A=0.899
The Genome Aggregation Database	Other	Sub	302	G=0.100	A=0.900
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.107	A=0.892
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.119	A=0.881

PMID	Title	Author	Journal
22481050	Genetic influences on craving for alcohol.	Agrawal A	Addict Behav

SNP ID	p-value	Traits	Study
rs2666055	2.9E-05	alcohol craving with or without dependence	22481050

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr4	179389460	179389521	E067	45040
chr4	179389563	179389632	E067	45143
chr4	179389710	179389798	E067	45290
chr4	179388979	179389147	E069	44559
chr4	179389460	179389521	E069	45040
chr4	179389563	179389632	E069	45143
chr4	179389710	179389798	E069	45290
chr4	179390172	179390243	E069	45752
chr4	179388979	179389147	E071	44559
chr4	179389460	179389521	E071	45040
chr4	179389563	179389632	E071	45143
chr4	179389710	179389798	E071	45290
chr4	179390172	179390243	E071	45752
chr4	179389460	179389521	E072	45040
chr4	179389563	179389632	E072	45143
chr4	179389710	179389798	E072	45290
chr4	179389460	179389521	E074	45040
chr4	179389563	179389632	E074	45143
chr4	179389710	179389798	E074	45290
chr4	179392252	179392426	E082	47832

rs2666055