rs2666055

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
G==0100 (3004/29946,GnomAD)
G==0107 (3143/29118,TOPMED)
G==0092 (463/5008,1000G)
G==0119 (458/3854,ALSPAC)
G==0119 (441/3708,TWINSUK)
chr4:178423266 (GRCh38.p7) (4q34.3)
AD
GWASdb2
1   publication(s)
See rs on genome
20 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.178423266G>A
GRCh37.p13 chr 4NC_000004.11:g.179344420G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.107A=0.893
1000GenomesAmericanSub694G=0.070A=0.930
1000GenomesEast AsianSub1008G=0.064A=0.936
1000GenomesEuropeSub1006G=0.095A=0.905
1000GenomesGlobalStudy-wide5008G=0.092A=0.908
1000GenomesSouth AsianSub978G=0.110A=0.890
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.119A=0.881
The Genome Aggregation DatabaseAfricanSub8706G=0.101A=0.899
The Genome Aggregation DatabaseAmericanSub836G=0.060A=0.940
The Genome Aggregation DatabaseEast AsianSub1612G=0.058A=0.942
The Genome Aggregation DatabaseEuropeSub18490G=0.105A=0.894
The Genome Aggregation DatabaseGlobalStudy-wide29946G=0.100A=0.899
The Genome Aggregation DatabaseOtherSub302G=0.100A=0.900
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.107A=0.892
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.119A=0.881
PMID Title Author Journal
22481050Genetic influences on craving for alcohol.Agrawal AAddict Behav

P-Value

SNP ID p-value Traits Study
rs26660552.9E-05alcohol craving with or without dependence22481050

eQTL of rs2666055 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2666055 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr4179389460179389521E06745040
chr4179389563179389632E06745143
chr4179389710179389798E06745290
chr4179388979179389147E06944559
chr4179389460179389521E06945040
chr4179389563179389632E06945143
chr4179389710179389798E06945290
chr4179390172179390243E06945752
chr4179388979179389147E07144559
chr4179389460179389521E07145040
chr4179389563179389632E07145143
chr4179389710179389798E07145290
chr4179390172179390243E07145752
chr4179389460179389521E07245040
chr4179389563179389632E07245143
chr4179389710179389798E07245290
chr4179389460179389521E07445040
chr4179389563179389632E07445143
chr4179389710179389798E07445290
chr4179392252179392426E08247832