Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 2 | NC_000002.12:g.59541877C>G |
GRCh38.p7 chr 2 | NC_000002.12:g.59541877C>T |
GRCh37.p13 chr 2 | NC_000002.11:g.59769012C>G |
GRCh37.p13 chr 2 | NC_000002.11:g.59769012C>T |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.744 | T=0.256 |
1000Genomes | American | Sub | 694 | C=0.600 | T=0.400 |
1000Genomes | East Asian | Sub | 1008 | C=0.477 | T=0.523 |
1000Genomes | Europe | Sub | 1006 | C=0.688 | T=0.312 |
1000Genomes | Global | Study-wide | 5008 | C=0.648 | T=0.352 |
1000Genomes | South Asian | Sub | 978 | C=0.680 | T=0.320 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.695 | T=0.305 |
The Genome Aggregation Database | African | Sub | 8696 | C=0.739 | G=0.000 |
The Genome Aggregation Database | American | Sub | 834 | C=0.590 | G=0.00, |
The Genome Aggregation Database | East Asian | Sub | 1604 | C=0.471 | G=0.000 |
The Genome Aggregation Database | Europe | Sub | 18394 | C=0.726 | G=0.000 |
The Genome Aggregation Database | Global | Study-wide | 29828 | C=0.711 | G=0.000 |
The Genome Aggregation Database | Other | Sub | 300 | C=0.660 | G=0.00, |
Trans-Omics for Precision Medicine | Global | Study-wide | 29116 | C=0.696 | T=0.303 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.687 | T=0.313 |
PMID | Title | Author | Journal |
---|---|---|---|
23743675 | A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks. | Kapoor M | Hum Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs2674048 | 7E-05 | alcohol consumption | 23743675 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr2 | 102842768 | 102842859 | E067 | -14404 |
chr2 | 102843334 | 102845009 | E067 | -12254 |
chr2 | 102856979 | 102857777 | E067 | 0 |
chr2 | 102841599 | 102841765 | E068 | -15498 |
chr2 | 102841981 | 102842078 | E068 | -15185 |
chr2 | 102842768 | 102842859 | E068 | -14404 |
chr2 | 102856979 | 102857777 | E068 | 0 |
chr2 | 102842768 | 102842859 | E069 | -14404 |
chr2 | 102856979 | 102857777 | E069 | 0 |
chr2 | 102843334 | 102845009 | E070 | -12254 |
chr2 | 102868374 | 102868414 | E070 | 11111 |
chr2 | 102841599 | 102841765 | E071 | -15498 |
chr2 | 102841981 | 102842078 | E071 | -15185 |
chr2 | 102842768 | 102842859 | E071 | -14404 |
chr2 | 102856979 | 102857777 | E071 | 0 |
chr2 | 102857870 | 102858077 | E071 | 607 |
chr2 | 102842768 | 102842859 | E072 | -14404 |
chr2 | 102843334 | 102845009 | E072 | -12254 |
chr2 | 102856979 | 102857777 | E072 | 0 |
chr2 | 102842768 | 102842859 | E073 | -14404 |
chr2 | 102843334 | 102845009 | E073 | -12254 |
chr2 | 102856979 | 102857777 | E073 | 0 |
chr2 | 102841599 | 102841765 | E074 | -15498 |
chr2 | 102841981 | 102842078 | E074 | -15185 |
chr2 | 102842768 | 102842859 | E074 | -14404 |
chr2 | 102843334 | 102845009 | E074 | -12254 |
chr2 | 102856979 | 102857777 | E074 | 0 |
chr2 | 102842768 | 102842859 | E081 | -14404 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr2 | 102867321 | 102867902 | E067 | 10058 |
chr2 | 102867922 | 102868338 | E067 | 10659 |
chr2 | 102867321 | 102867902 | E068 | 10058 |
chr2 | 102867922 | 102868338 | E068 | 10659 |
chr2 | 102867321 | 102867902 | E069 | 10058 |
chr2 | 102867922 | 102868338 | E070 | 10659 |
chr2 | 102867321 | 102867902 | E071 | 10058 |
chr2 | 102867922 | 102868338 | E071 | 10659 |
chr2 | 102867321 | 102867902 | E072 | 10058 |
chr2 | 102867922 | 102868338 | E072 | 10659 |
chr2 | 102867321 | 102867902 | E073 | 10058 |
chr2 | 102867321 | 102867902 | E074 | 10058 |
chr2 | 102867922 | 102868338 | E074 | 10659 |
chr2 | 102867321 | 102867902 | E081 | 10058 |
chr2 | 102867922 | 102868338 | E081 | 10659 |
chr2 | 102867321 | 102867902 | E082 | 10058 |
chr2 | 102867922 | 102868338 | E082 | 10659 |