rs2674061

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0302 (9040/29876,GnomAD)
T=0327 (9520/29116,TOPMED)
T=0371 (1858/5008,1000G)
T=0298 (1149/3854,ALSPAC)
T=0305 (1131/3708,TWINSUK)
chr2:59526196 (GRCh38.p7) (2p16.1)
AD
GWASdb2
1   publication(s)
See rs on genome
13 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.59526196C>T
GRCh37.p13 chr 2NC_000002.11:g.59753331C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.651T=0.349
1000GenomesAmericanSub694C=0.570T=0.430
1000GenomesEast AsianSub1008C=0.489T=0.511
1000GenomesEuropeSub1006C=0.706T=0.294
1000GenomesGlobalStudy-wide5008C=0.629T=0.371
1000GenomesSouth AsianSub978C=0.710T=0.290
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.702T=0.298
The Genome Aggregation DatabaseAfricanSub8680C=0.678T=0.322
The Genome Aggregation DatabaseAmericanSub832C=0.540T=0.460
The Genome Aggregation DatabaseEast AsianSub1610C=0.484T=0.516
The Genome Aggregation DatabaseEuropeSub18452C=0.732T=0.267
The Genome Aggregation DatabaseGlobalStudy-wide29876C=0.697T=0.302
The Genome Aggregation DatabaseOtherSub302C=0.700T=0.300
Trans-Omics for Precision MedicineGlobalStudy-wide29116C=0.673T=0.327
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.695T=0.305
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs26740616.07E-05alcohol consumption23743675

eQTL of rs2674061 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2674061 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr25979357059793733E08140239
chr25979377559794244E08140444
chr25979429459794429E08140963
chr25979448259795096E08141151
chr25979531859795414E08141987
chr25979556659795892E08142235
chr25979831859798751E08144987
chr25979946259799668E08146131
chr25979357059793733E08240239
chr25979377559794244E08240444
chr25979429459794429E08240963
chr25979448259795096E08241151
chr25979531859795414E08241987