SNP Detail Info-rs2674067

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0297 (8892/29924,GnomAD)
G=0313 (9132/29116,TOPMED)
G=0364 (1823/5008,1000G)
G=0320 (1232/3854,ALSPAC)
G=0323 (1196/3708,TWINSUK)

Position: chr2:59538549 (GRCh38.p7) (2p16.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 23 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 2	NC_000002.12:g.59538549A>G
GRCh37.p13 chr 2	NC_000002.11:g.59765684A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.728	G=0.272
1000Genomes	American	Sub	694	A=0.590	G=0.410
1000Genomes	East Asian	Sub	1008	A=0.475	G=0.525
1000Genomes	Europe	Sub	1006	A=0.676	G=0.324
1000Genomes	Global	Study-wide	5008	A=0.636	G=0.364
1000Genomes	South Asian	Sub	978	A=0.670	G=0.330
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.680	G=0.320
The Genome Aggregation Database	African	Sub	8708	A=0.728	G=0.272
The Genome Aggregation Database	American	Sub	838	A=0.570	G=0.430
The Genome Aggregation Database	East Asian	Sub	1610	A=0.468	G=0.532
The Genome Aggregation Database	Europe	Sub	18466	A=0.718	G=0.282
The Genome Aggregation Database	Global	Study-wide	29924	A=0.702	G=0.297
The Genome Aggregation Database	Other	Sub	302	A=0.660	G=0.340
Trans-Omics for Precision Medicine	Global	Study-wide	29116	A=0.686	G=0.313
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.677	G=0.323

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs2674067	7.35E-05	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr2	59812236	59812346	E070	46552
chr2	59812673	59813110	E070	46989
chr2	59813306	59813694	E070	47622
chr2	59812673	59813110	E071	46989
chr2	59812673	59813110	E072	46989
chr2	59812673	59813110	E074	46989
chr2	59793570	59793733	E081	27886
chr2	59793775	59794244	E081	28091
chr2	59794294	59794429	E081	28610
chr2	59794482	59795096	E081	28798
chr2	59795318	59795414	E081	29634
chr2	59795566	59795892	E081	29882
chr2	59798318	59798751	E081	32634
chr2	59799462	59799668	E081	33778
chr2	59812673	59813110	E081	46989
chr2	59793570	59793733	E082	27886
chr2	59793775	59794244	E082	28091
chr2	59794294	59794429	E082	28610
chr2	59794482	59795096	E082	28798
chr2	59795318	59795414	E082	29634
chr2	59812236	59812346	E082	46552
chr2	59812673	59813110	E082	46989
chr2	59813306	59813694	E082	47622

rs2674067