rs2674079

Homo sapiens
A>C / A>T
None
Check p-value
SNV (Single Nucleotide Variation)
C=0298 (8934/29908,GnomAD)
C=0318 (9259/29116,TOPMED)
C=0367 (1838/5008,1000G)
C=0320 (1234/3854,ALSPAC)
C=0324 (1203/3708,TWINSUK)
chr2:59544344 (GRCh38.p7) (2p16.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.59544344A>C
GRCh38.p7 chr 2NC_000002.12:g.59544344A>T
GRCh37.p13 chr 2NC_000002.11:g.59771479A>C
GRCh37.p13 chr 2NC_000002.11:g.59771479A>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.717C=0.283
1000GenomesAmericanSub694A=0.590C=0.41,
1000GenomesEast AsianSub1008A=0.475C=0.522
1000GenomesEuropeSub1006A=0.677C=0.323
1000GenomesGlobalStudy-wide5008A=0.632C=0.367
1000GenomesSouth AsianSub978A=0.660C=0.34,
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.680C=0.320
The Genome Aggregation DatabaseAfricanSub8712A=0.722T=0.000
The Genome Aggregation DatabaseAmericanSub838A=0.570T=0.00,
The Genome Aggregation DatabaseEast AsianSub1608A=0.470T=0.007
The Genome Aggregation DatabaseEuropeSub18448A=0.717T=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29908A=0.700T=0.000
The Genome Aggregation DatabaseOtherSub302A=0.670T=0.00,
Trans-Omics for Precision MedicineGlobalStudy-wide29116A=0.682C=0.318
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.676C=0.324
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs26740796.42E-05alcohol consumption23743675

eQTL of rs2674079 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2674079 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction