rs2677485

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0011 (330/29928,GnomAD)
T==0009 (282/29116,TOPMED)
T==0005 (27/5008,1000G)
T==0018 (69/3854,ALSPAC)
T==0021 (79/3708,TWINSUK)
chr2:155678644 (GRCh38.p7) (2q24.1)
AD
GWASdb2
1   publication(s)
See rs on genome
18 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.155678644T>C
GRCh37.p13 chr 2NC_000002.11:g.156535156T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.002C=0.998
1000GenomesAmericanSub694T=0.010C=0.990
1000GenomesEast AsianSub1008T=0.000C=1.000
1000GenomesEuropeSub1006T=0.007C=0.993
1000GenomesGlobalStudy-wide5008T=0.005C=0.995
1000GenomesSouth AsianSub978T=0.010C=0.990
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.018C=0.982
The Genome Aggregation DatabaseAfricanSub8734T=0.004C=0.996
The Genome Aggregation DatabaseAmericanSub836T=0.010C=0.990
The Genome Aggregation DatabaseEast AsianSub1616T=0.002C=0.998
The Genome Aggregation DatabaseEuropeSub18442T=0.015C=0.984
The Genome Aggregation DatabaseGlobalStudy-wide29928T=0.011C=0.989
The Genome Aggregation DatabaseOtherSub300T=0.000C=1.000
Trans-Omics for Precision MedicineGlobalStudy-wide29116T=0.009C=0.990
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.021C=0.979
PMID Title Author Journal
23953852Genome-wide association studies of maximum number of drinks.Pan YJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs26774855.5E-07alcohol consumption23953852

eQTL of rs2677485 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2677485 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr2156547477156547564E06812321
chr2156547580156547696E06812424
chr2156564723156564808E06829567
chr2156545853156546995E06910697
chr2156547091156547260E06911935
chr2156547477156547564E06912321
chr2156547580156547696E06912424
chr2156564723156564808E06929567
chr2156564723156564808E07029567
chr2156583708156584279E07048552
chr2156545853156546995E07110697
chr2156547091156547260E07111935
chr2156547477156547564E07112321
chr2156547580156547696E07112424
chr2156564723156564808E07129567
chr2156548664156548911E07413508
chr2156564723156564808E07429567
chr2156582947156583113E08147791