SNP Detail Info-rs270188

Organism: Homo sapiens

Alleles: G>A / G>C

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0163 (4900/29954,GnomAD)
G==0139 (4057/29118,TOPMED)
G==0220 (1101/5008,1000G)

Position: chr5:5124036 (GRCh38.p7) (5p15.32)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.102	A=0.898
1000Genomes	American	Sub	694	G=0.180	A=0.820
1000Genomes	East Asian	Sub	1008	G=0.566	A=0.434
1000Genomes	Europe	Sub	1006	G=0.157	A=0.843
1000Genomes	Global	Study-wide	5008	G=0.220	A=0.780
1000Genomes	South Asian	Sub	978	G=0.110	A=0.890
The Genome Aggregation Database	African	Sub	8722	G=0.127	C=0.000
The Genome Aggregation Database	American	Sub	838	G=0.230	C=0.00,
The Genome Aggregation Database	East Asian	Sub	1608	G=0.509	C=0.000
The Genome Aggregation Database	Europe	Sub	18484	G=0.146	C=0.000
The Genome Aggregation Database	Global	Study-wide	29954	G=0.163	C=0.000
The Genome Aggregation Database	Other	Sub	302	G=0.220	C=0.00,
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.139	A=0.860

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs270188	5.96E-05	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs270188