SNP Detail Info-rs2705962

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0238 (7149/29926,GnomAD)
G=0259 (7544/29118,TOPMED)
G=0203 (1017/5008,1000G)
G=0168 (649/3854,ALSPAC)
G=0190 (703/3708,TWINSUK)

Position: chr4:178358811 (GRCh38.p7) (4q34.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 4	NC_000004.12:g.178358811A>G
GRCh37.p13 chr 4	NC_000004.11:g.179279965A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.575	G=0.425
1000Genomes	American	Sub	694	A=0.880	G=0.120
1000Genomes	East Asian	Sub	1008	A=0.977	G=0.023
1000Genomes	Europe	Sub	1006	A=0.796	G=0.204
1000Genomes	Global	Study-wide	5008	A=0.797	G=0.203
1000Genomes	South Asian	Sub	978	A=0.850	G=0.150
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.832	G=0.168
The Genome Aggregation Database	African	Sub	8702	A=0.633	G=0.367
The Genome Aggregation Database	American	Sub	838	A=0.890	G=0.110
The Genome Aggregation Database	East Asian	Sub	1618	A=0.961	G=0.039
The Genome Aggregation Database	Europe	Sub	18466	A=0.797	G=0.202
The Genome Aggregation Database	Global	Study-wide	29926	A=0.761	G=0.238
The Genome Aggregation Database	Other	Sub	302	A=0.780	G=0.220
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.740	G=0.259
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.810	G=0.190

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs2705962	0.000776	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs2705962