Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 11 | NC_000011.10:g.110413469C>T |
GRCh37.p13 chr 11 | NC_000011.9:g.110284193C>T |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.747 | T=0.253 |
1000Genomes | American | Sub | 694 | C=0.870 | T=0.130 |
1000Genomes | East Asian | Sub | 1008 | C=0.959 | T=0.041 |
1000Genomes | Europe | Sub | 1006 | C=0.780 | T=0.220 |
1000Genomes | Global | Study-wide | 5008 | C=0.850 | T=0.150 |
1000Genomes | South Asian | Sub | 978 | C=0.930 | T=0.070 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.777 | T=0.223 |
The Genome Aggregation Database | African | Sub | 8722 | C=0.742 | T=0.258 |
The Genome Aggregation Database | American | Sub | 836 | C=0.880 | T=0.120 |
The Genome Aggregation Database | East Asian | Sub | 1622 | C=0.959 | T=0.041 |
The Genome Aggregation Database | Europe | Sub | 18498 | C=0.786 | T=0.213 |
The Genome Aggregation Database | Global | Study-wide | 29980 | C=0.785 | T=0.214 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.770 | T=0.230 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.775 | T=0.224 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.783 | T=0.217 |
PMID | Title | Author | Journal |
---|---|---|---|
24987808 | Variants identified by hepatocellular carcinoma and chronic hepatitis B virus infection susceptibility GWAS associated with survival in HBV-related hepatocellular carcinoma. | Li C | PLoS One |
17158188 | Novel genes identified in a high-density genome wide association study for nicotine dependence. | Bierut LJ | Hum Mol Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs2724432 | 0.00045 | nicotine dependence | 17158188 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr11 | 110234355 | 110234584 | E067 | -49609 |
chr11 | 110247286 | 110248056 | E067 | -36137 |
chr11 | 110330076 | 110330206 | E067 | 45883 |
chr11 | 110330210 | 110330321 | E067 | 46017 |
chr11 | 110330341 | 110330416 | E067 | 46148 |
chr11 | 110330433 | 110330506 | E067 | 46240 |
chr11 | 110330958 | 110331035 | E067 | 46765 |
chr11 | 110331041 | 110331143 | E067 | 46848 |
chr11 | 110236923 | 110237497 | E068 | -46696 |
chr11 | 110243695 | 110244609 | E068 | -39584 |
chr11 | 110303112 | 110305027 | E068 | 18919 |
chr11 | 110330076 | 110330206 | E068 | 45883 |
chr11 | 110330210 | 110330321 | E068 | 46017 |
chr11 | 110330341 | 110330416 | E068 | 46148 |
chr11 | 110330433 | 110330506 | E068 | 46240 |
chr11 | 110234355 | 110234584 | E069 | -49609 |
chr11 | 110247193 | 110247249 | E069 | -36944 |
chr11 | 110247286 | 110248056 | E069 | -36137 |
chr11 | 110318237 | 110318916 | E069 | 34044 |
chr11 | 110319215 | 110319313 | E069 | 35022 |
chr11 | 110330076 | 110330206 | E069 | 45883 |
chr11 | 110330210 | 110330321 | E069 | 46017 |
chr11 | 110330341 | 110330416 | E069 | 46148 |
chr11 | 110330433 | 110330506 | E069 | 46240 |
chr11 | 110330958 | 110331035 | E069 | 46765 |
chr11 | 110331041 | 110331143 | E069 | 46848 |
chr11 | 110331250 | 110331566 | E069 | 47057 |
chr11 | 110243695 | 110244609 | E070 | -39584 |
chr11 | 110234355 | 110234584 | E071 | -49609 |
chr11 | 110303112 | 110305027 | E071 | 18919 |
chr11 | 110319377 | 110319638 | E071 | 35184 |
chr11 | 110330076 | 110330206 | E071 | 45883 |
chr11 | 110330210 | 110330321 | E071 | 46017 |
chr11 | 110330341 | 110330416 | E071 | 46148 |
chr11 | 110330433 | 110330506 | E071 | 46240 |
chr11 | 110330958 | 110331035 | E071 | 46765 |
chr11 | 110331041 | 110331143 | E071 | 46848 |
chr11 | 110234355 | 110234584 | E072 | -49609 |
chr11 | 110247286 | 110248056 | E072 | -36137 |
chr11 | 110319215 | 110319313 | E072 | 35022 |
chr11 | 110330341 | 110330416 | E072 | 46148 |
chr11 | 110330433 | 110330506 | E072 | 46240 |
chr11 | 110330958 | 110331035 | E072 | 46765 |
chr11 | 110331041 | 110331143 | E072 | 46848 |
chr11 | 110234355 | 110234584 | E073 | -49609 |
chr11 | 110330076 | 110330206 | E073 | 45883 |
chr11 | 110330210 | 110330321 | E073 | 46017 |
chr11 | 110330341 | 110330416 | E073 | 46148 |
chr11 | 110330433 | 110330506 | E073 | 46240 |
chr11 | 110330958 | 110331035 | E073 | 46765 |
chr11 | 110331041 | 110331143 | E073 | 46848 |
chr11 | 110331250 | 110331566 | E073 | 47057 |
chr11 | 110247193 | 110247249 | E074 | -36944 |
chr11 | 110247286 | 110248056 | E074 | -36137 |
chr11 | 110303112 | 110305027 | E074 | 18919 |
chr11 | 110319215 | 110319313 | E074 | 35022 |
chr11 | 110319377 | 110319638 | E074 | 35184 |
chr11 | 110330076 | 110330206 | E074 | 45883 |
chr11 | 110330210 | 110330321 | E074 | 46017 |
chr11 | 110330341 | 110330416 | E074 | 46148 |
chr11 | 110330433 | 110330506 | E074 | 46240 |
chr11 | 110330958 | 110331035 | E074 | 46765 |
chr11 | 110331041 | 110331143 | E074 | 46848 |
chr11 | 110331250 | 110331566 | E074 | 47057 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr11 | 110299784 | 110303022 | E067 | 15591 |
chr11 | 110299784 | 110303022 | E068 | 15591 |
chr11 | 110299784 | 110303022 | E069 | 15591 |
chr11 | 110299784 | 110303022 | E070 | 15591 |
chr11 | 110299784 | 110303022 | E071 | 15591 |
chr11 | 110299784 | 110303022 | E072 | 15591 |
chr11 | 110299784 | 110303022 | E073 | 15591 |
chr11 | 110299784 | 110303022 | E074 | 15591 |
chr11 | 110299784 | 110303022 | E081 | 15591 |
chr11 | 110299784 | 110303022 | E082 | 15591 |