| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 13 | NC_000013.11:g.107141642A>G |
| GRCh37.p13 chr 13 | NC_000013.10:g.107793990A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.147 | G=0.853 |
| 1000Genomes | American | Sub | 694 | A=0.150 | G=0.850 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.017 | G=0.983 |
| 1000Genomes | Europe | Sub | 1006 | A=0.249 | G=0.751 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.141 | G=0.859 |
| 1000Genomes | South Asian | Sub | 978 | A=0.150 | G=0.850 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.244 | G=0.756 |
| The Genome Aggregation Database | African | Sub | 8714 | A=0.148 | G=0.852 |
| The Genome Aggregation Database | American | Sub | 834 | A=0.130 | G=0.870 |
| The Genome Aggregation Database | East Asian | Sub | 1612 | A=0.022 | G=0.978 |
| The Genome Aggregation Database | Europe | Sub | 18436 | A=0.231 | G=0.768 |
| The Genome Aggregation Database | Global | Study-wide | 29898 | A=0.192 | G=0.807 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.220 | G=0.780 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.184 | G=0.815 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.236 | G=0.764 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 23542338 | A genomewide association study of smoking relapse in four European population-based samples. | Tozzi F | Psychiatr Genet |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs2769920 | 2.63E-06 | nicotine dependence (smoking) | 23542338 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr13 | 107790307 | 107790357 | E074 | -3633 |
| chr13 | 107769172 | 107769304 | E081 | -24686 |
| chr13 | 107769495 | 107769673 | E081 | -24317 |
| chr13 | 107769808 | 107770252 | E081 | -23738 |
| chr13 | 107770967 | 107771064 | E081 | -22926 |
| chr13 | 107769808 | 107770252 | E082 | -23738 |
| chr13 | 107770394 | 107770468 | E082 | -23522 |
| chr13 | 107770967 | 107771064 | E082 | -22926 |
| chr13 | 107790915 | 107791150 | E082 | -2840 |
| chr13 | 107791275 | 107791695 | E082 | -2295 |