Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 8 | NC_000008.11:g.93340574A>G |
GRCh37.p13 chr 8 | NC_000008.10:g.94352802A>G |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
LOC105375642 transcript variant X1 | XR_001745998.1:n. | N/A | Intron Variant |
LOC105375642 transcript variant X2 | XR_001745999.1:n. | N/A | Intron Variant |
LOC105375642 transcript variant X3 | XR_001746000.1:n. | N/A | Intron Variant |
LOC105375642 transcript variant X4 | XR_001746001.1:n. | N/A | Intron Variant |
LOC105375642 transcript variant X5 | XR_001746002.1:n. | N/A | Intron Variant |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
LOC107986956 transcript variant X1 | XR_001745995.1:n. | N/A | Upstream Transcript Variant |
LOC107986956 transcript variant X2 | XR_001745996.1:n. | N/A | Upstream Transcript Variant |
LOC107986956 transcript variant X3 | XR_001745997.1:n. | N/A | Upstream Transcript Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | A=0.200 | G=0.800 |
1000Genomes | American | Sub | 694 | A=0.240 | G=0.760 |
1000Genomes | East Asian | Sub | 1008 | A=0.214 | G=0.786 |
1000Genomes | Europe | Sub | 1006 | A=0.258 | G=0.742 |
1000Genomes | Global | Study-wide | 5008 | A=0.232 | G=0.768 |
1000Genomes | South Asian | Sub | 978 | A=0.260 | G=0.740 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.250 | G=0.750 |
The Genome Aggregation Database | African | Sub | 8726 | A=0.210 | G=0.790 |
The Genome Aggregation Database | American | Sub | 838 | A=0.320 | G=0.680 |
The Genome Aggregation Database | East Asian | Sub | 1618 | A=0.182 | G=0.818 |
The Genome Aggregation Database | Europe | Sub | 18476 | A=0.226 | G=0.773 |
The Genome Aggregation Database | Global | Study-wide | 29960 | A=0.223 | G=0.776 |
The Genome Aggregation Database | Other | Sub | 302 | A=0.350 | G=0.650 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.229 | G=0.770 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.259 | G=0.741 |
PMID | Title | Author | Journal |
---|---|---|---|
19581569 | Genome-wide association study of alcohol dependence. | Treutlein J | Arch Gen Psychiatry |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs277778 | 4.31E-05 | alcohol dependence | 19581569 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr8 | 94371989 | 94372046 | E067 | 19187 |
chr8 | 94372084 | 94372138 | E067 | 19282 |
chr8 | 94372348 | 94372398 | E067 | 19546 |
chr8 | 94372551 | 94373060 | E067 | 19749 |
chr8 | 94373166 | 94373764 | E067 | 20364 |
chr8 | 94373166 | 94373764 | E068 | 20364 |
chr8 | 94371548 | 94371876 | E069 | 18746 |
chr8 | 94371879 | 94371923 | E069 | 19077 |
chr8 | 94371989 | 94372046 | E069 | 19187 |
chr8 | 94370712 | 94370816 | E070 | 17910 |
chr8 | 94370949 | 94370999 | E070 | 18147 |
chr8 | 94371015 | 94371292 | E070 | 18213 |
chr8 | 94371321 | 94371504 | E070 | 18519 |
chr8 | 94371548 | 94371876 | E070 | 18746 |
chr8 | 94371879 | 94371923 | E070 | 19077 |
chr8 | 94371989 | 94372046 | E070 | 19187 |
chr8 | 94372084 | 94372138 | E070 | 19282 |
chr8 | 94372348 | 94372398 | E070 | 19546 |
chr8 | 94372551 | 94373060 | E070 | 19749 |
chr8 | 94373166 | 94373764 | E070 | 20364 |
chr8 | 94373794 | 94374026 | E070 | 20992 |
chr8 | 94374029 | 94374178 | E070 | 21227 |
chr8 | 94374204 | 94374276 | E070 | 21402 |
chr8 | 94374394 | 94374467 | E070 | 21592 |
chr8 | 94374554 | 94374770 | E070 | 21752 |
chr8 | 94375024 | 94375094 | E070 | 22222 |
chr8 | 94375323 | 94375439 | E070 | 22521 |
chr8 | 94377037 | 94377114 | E070 | 24235 |
chr8 | 94377165 | 94377230 | E070 | 24363 |
chr8 | 94377232 | 94377423 | E070 | 24430 |
chr8 | 94377652 | 94377763 | E070 | 24850 |
chr8 | 94377860 | 94377915 | E070 | 25058 |
chr8 | 94378133 | 94378183 | E070 | 25331 |
chr8 | 94379146 | 94379350 | E070 | 26344 |
chr8 | 94401344 | 94401439 | E070 | 48542 |
chr8 | 94402280 | 94402351 | E070 | 49478 |
chr8 | 94402352 | 94402440 | E070 | 49550 |
chr8 | 94363742 | 94364020 | E071 | 10940 |
chr8 | 94372348 | 94372398 | E072 | 19546 |
chr8 | 94373166 | 94373764 | E072 | 20364 |
chr8 | 94371015 | 94371292 | E073 | 18213 |
chr8 | 94371321 | 94371504 | E073 | 18519 |
chr8 | 94371548 | 94371876 | E073 | 18746 |
chr8 | 94371879 | 94371923 | E073 | 19077 |
chr8 | 94371989 | 94372046 | E073 | 19187 |
chr8 | 94372084 | 94372138 | E073 | 19282 |
chr8 | 94372348 | 94372398 | E073 | 19546 |
chr8 | 94372551 | 94373060 | E073 | 19749 |
chr8 | 94373166 | 94373764 | E073 | 20364 |
chr8 | 94370712 | 94370816 | E074 | 17910 |
chr8 | 94370949 | 94370999 | E074 | 18147 |
chr8 | 94371015 | 94371292 | E074 | 18213 |
chr8 | 94371321 | 94371504 | E074 | 18519 |
chr8 | 94371548 | 94371876 | E074 | 18746 |
chr8 | 94371879 | 94371923 | E074 | 19077 |
chr8 | 94371989 | 94372046 | E074 | 19187 |
chr8 | 94372084 | 94372138 | E074 | 19282 |
chr8 | 94372348 | 94372398 | E074 | 19546 |
chr8 | 94309037 | 94309153 | E081 | -43649 |
chr8 | 94309271 | 94309526 | E081 | -43276 |
chr8 | 94309601 | 94309844 | E081 | -42958 |
chr8 | 94309850 | 94309943 | E081 | -42859 |
chr8 | 94310020 | 94310149 | E081 | -42653 |
chr8 | 94310150 | 94310190 | E081 | -42612 |
chr8 | 94310333 | 94310433 | E081 | -42369 |
chr8 | 94310504 | 94310595 | E081 | -42207 |
chr8 | 94370712 | 94370816 | E081 | 17910 |
chr8 | 94370949 | 94370999 | E081 | 18147 |
chr8 | 94371015 | 94371292 | E081 | 18213 |
chr8 | 94371321 | 94371504 | E081 | 18519 |
chr8 | 94371548 | 94371876 | E081 | 18746 |
chr8 | 94371879 | 94371923 | E081 | 19077 |
chr8 | 94371989 | 94372046 | E081 | 19187 |
chr8 | 94372084 | 94372138 | E081 | 19282 |
chr8 | 94372348 | 94372398 | E081 | 19546 |
chr8 | 94372551 | 94373060 | E081 | 19749 |
chr8 | 94373166 | 94373764 | E081 | 20364 |
chr8 | 94373794 | 94374026 | E081 | 20992 |
chr8 | 94374029 | 94374178 | E081 | 21227 |
chr8 | 94377037 | 94377114 | E081 | 24235 |
chr8 | 94377165 | 94377230 | E081 | 24363 |
chr8 | 94377232 | 94377423 | E081 | 24430 |
chr8 | 94377652 | 94377763 | E081 | 24850 |
chr8 | 94370712 | 94370816 | E082 | 17910 |