SNP Detail Info-rs2799787

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0239 (7136/29858,GnomAD)
G==0220 (6430/29118,TOPMED)
G==0230 (1154/5008,1000G)
G==0283 (1089/3854,ALSPAC)
G==0282 (1046/3708,TWINSUK)

Position: chr14:41285347 (GRCh38.p7) (14q21.1)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 3 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 14	NC_000014.9:g.41285347G>A
GRCh37.p13 chr 14	NC_000014.8:g.41754550G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.126	A=0.874
1000Genomes	American	Sub	694	G=0.210	A=0.790
1000Genomes	East Asian	Sub	1008	G=0.250	A=0.750
1000Genomes	Europe	Sub	1006	G=0.263	A=0.737
1000Genomes	Global	Study-wide	5008	G=0.230	A=0.770
1000Genomes	South Asian	Sub	978	G=0.330	A=0.670
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.283	A=0.717
The Genome Aggregation Database	African	Sub	8716	G=0.183	A=0.817
The Genome Aggregation Database	American	Sub	832	G=0.170	A=0.830
The Genome Aggregation Database	East Asian	Sub	1572	G=0.260	A=0.740
The Genome Aggregation Database	Europe	Sub	18436	G=0.266	A=0.733
The Genome Aggregation Database	Global	Study-wide	29858	G=0.239	A=0.761
The Genome Aggregation Database	Other	Sub	302	G=0.250	A=0.750
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.220	A=0.779
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.282	A=0.718

PMID	Title	Author	Journal
17158188	Novel genes identified in a high-density genome wide association study for nicotine dependence.	Bierut LJ	Hum Mol Genet

SNP ID	p-value	Traits	Study
rs2799787	0.000163	nicotine dependence	17158188

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr14	41754505	41754720	E070	0
chr14	41747200	41747372	E081	-7178
chr14	41747200	41747372	E082	-7178

rs2799787