rs2799789

Homo sapiens
A>C
None
Check p-value
SNV (Single Nucleotide Variation)
A==0229 (6852/29852,GnomAD)
A==0208 (6081/29118,TOPMED)
A==0235 (1175/5008,1000G)
A==0278 (1070/3854,ALSPAC)
A==0275 (1020/3708,TWINSUK)
chr14:41223783 (GRCh38.p7) (14q21.1)
ND
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 14NC_000014.9:g.41223783A>C
GRCh37.p13 chr 14NC_000014.8:g.41692986A>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.119C=0.881
1000GenomesAmericanSub694A=0.210C=0.790
1000GenomesEast AsianSub1008A=0.291C=0.709
1000GenomesEuropeSub1006A=0.258C=0.742
1000GenomesGlobalStudy-wide5008A=0.235C=0.765
1000GenomesSouth AsianSub978A=0.330C=0.670
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.278C=0.722
The Genome Aggregation DatabaseAfricanSub8716A=0.157C=0.843
The Genome Aggregation DatabaseAmericanSub836A=0.160C=0.840
The Genome Aggregation DatabaseEast AsianSub1604A=0.295C=0.705
The Genome Aggregation DatabaseEuropeSub18394A=0.261C=0.738
The Genome Aggregation DatabaseGlobalStudy-wide29852A=0.229C=0.770
The Genome Aggregation DatabaseOtherSub302A=0.240C=0.760
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.208C=0.791
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.275C=0.725
PMID Title Author Journal
17158188Novel genes identified in a high-density genome wide association study for nicotine dependence.Bierut LJHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs27997890.000177nicotine dependence17158188

eQTL of rs2799789 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2799789 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.