| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 1 | NC_000001.11:g.234959184A>G |
| GRCh37.p13 chr 1 | NC_000001.10:g.235094931A>G |
| Molecule type | Change | Amino acid[Codon] | SO Term |
|---|---|---|---|
| LOC101927851 transcript | NR_125945.1:n. | N/A | Intron Variant |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.140 | G=0.860 |
| 1000Genomes | American | Sub | 694 | A=0.170 | G=0.830 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.002 | G=0.998 |
| 1000Genomes | Europe | Sub | 1006 | A=0.354 | G=0.646 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.160 | G=0.840 |
| 1000Genomes | South Asian | Sub | 978 | A=0.140 | G=0.860 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.372 | G=0.628 |
| The Genome Aggregation Database | African | Sub | 8722 | A=0.176 | G=0.824 |
| The Genome Aggregation Database | American | Sub | 834 | A=0.190 | G=0.810 |
| The Genome Aggregation Database | East Asian | Sub | 1620 | A=0.002 | G=0.998 |
| The Genome Aggregation Database | Europe | Sub | 18468 | A=0.376 | G=0.623 |
| The Genome Aggregation Database | Global | Study-wide | 29946 | A=0.291 | G=0.708 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.300 | G=0.700 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29116 | A=0.259 | G=0.741 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.361 | G=0.639 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs2802928 | 0.00049 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr1 | 235054696 | 235054859 | E067 | -40072 |
| chr1 | 235054870 | 235054948 | E067 | -39983 |
| chr1 | 235054997 | 235055541 | E067 | -39390 |
| chr1 | 235061288 | 235062920 | E067 | -32011 |
| chr1 | 235062960 | 235063189 | E067 | -31742 |
| chr1 | 235068178 | 235068228 | E067 | -26703 |
| chr1 | 235068458 | 235068571 | E067 | -26360 |
| chr1 | 235068744 | 235069192 | E067 | -25739 |
| chr1 | 235069200 | 235069543 | E067 | -25388 |
| chr1 | 235069587 | 235069750 | E067 | -25181 |
| chr1 | 235089864 | 235089969 | E067 | -4962 |
| chr1 | 235104735 | 235107619 | E067 | 9804 |
| chr1 | 235112354 | 235112493 | E067 | 17423 |
| chr1 | 235112535 | 235112632 | E067 | 17604 |
| chr1 | 235112635 | 235112762 | E067 | 17704 |
| chr1 | 235113727 | 235115433 | E067 | 18796 |
| chr1 | 235115502 | 235115692 | E067 | 20571 |
| chr1 | 235115742 | 235115899 | E067 | 20811 |
| chr1 | 235115918 | 235115988 | E067 | 20987 |
| chr1 | 235115989 | 235117196 | E067 | 21058 |
| chr1 | 235117508 | 235117842 | E067 | 22577 |
| chr1 | 235120869 | 235120919 | E067 | 25938 |
| chr1 | 235120999 | 235121066 | E067 | 26068 |
| chr1 | 235122225 | 235124027 | E067 | 27294 |
| chr1 | 235132235 | 235132313 | E067 | 37304 |
| chr1 | 235132397 | 235132488 | E067 | 37466 |
| chr1 | 235132751 | 235134595 | E067 | 37820 |
| chr1 | 235047831 | 235048131 | E068 | -46800 |
| chr1 | 235048301 | 235048371 | E068 | -46560 |
| chr1 | 235048446 | 235048580 | E068 | -46351 |
| chr1 | 235048659 | 235048815 | E068 | -46116 |
| chr1 | 235048857 | 235049107 | E068 | -45824 |
| chr1 | 235054696 | 235054859 | E068 | -40072 |
| chr1 | 235054870 | 235054948 | E068 | -39983 |
| chr1 | 235054997 | 235055541 | E068 | -39390 |
| chr1 | 235061288 | 235062920 | E068 | -32011 |
| chr1 | 235062960 | 235063189 | E068 | -31742 |
| chr1 | 235068458 | 235068571 | E068 | -26360 |
| chr1 | 235068744 | 235069192 | E068 | -25739 |
| chr1 | 235069200 | 235069543 | E068 | -25388 |
| chr1 | 235069587 | 235069750 | E068 | -25181 |
| chr1 | 235090027 | 235090083 | E068 | -4848 |
| chr1 | 235090271 | 235090328 | E068 | -4603 |
| chr1 | 235090411 | 235090506 | E068 | -4425 |
| chr1 | 235090615 | 235090752 | E068 | -4179 |
| chr1 | 235090813 | 235091513 | E068 | -3418 |
| chr1 | 235095132 | 235096092 | E068 | 201 |
| chr1 | 235104606 | 235104694 | E068 | 9675 |
| chr1 | 235104735 | 235107619 | E068 | 9804 |
| chr1 | 235107701 | 235107890 | E068 | 12770 |
| chr1 | 235107942 | 235108004 | E068 | 13011 |
| chr1 | 235111612 | 235111653 | E068 | 16681 |
| chr1 | 235112057 | 235112262 | E068 | 17126 |
| chr1 | 235112354 | 235112493 | E068 | 17423 |
| chr1 | 235112535 | 235112632 | E068 | 17604 |
| chr1 | 235112635 | 235112762 | E068 | 17704 |
| chr1 | 235113727 | 235115433 | E068 | 18796 |
| chr1 | 235115742 | 235115899 | E068 | 20811 |
| chr1 | 235115918 | 235115988 | E068 | 20987 |
| chr1 | 235115989 | 235117196 | E068 | 21058 |
| chr1 | 235119785 | 235120515 | E068 | 24854 |
| chr1 | 235120869 | 235120919 | E068 | 25938 |
| chr1 | 235120999 | 235121066 | E068 | 26068 |
| chr1 | 235122225 | 235124027 | E068 | 27294 |
| chr1 | 235132235 | 235132313 | E068 | 37304 |
| chr1 | 235132397 | 235132488 | E068 | 37466 |
| chr1 | 235132751 | 235134595 | E068 | 37820 |
| chr1 | 235054696 | 235054859 | E069 | -40072 |
| chr1 | 235054870 | 235054948 | E069 | -39983 |
| chr1 | 235054997 | 235055541 | E069 | -39390 |
| chr1 | 235061288 | 235062920 | E069 | -32011 |
| chr1 | 235062960 | 235063189 | E069 | -31742 |
| chr1 | 235068178 | 235068228 | E069 | -26703 |
| chr1 | 235068458 | 235068571 | E069 | -26360 |
| chr1 | 235068744 | 235069192 | E069 | -25739 |
| chr1 | 235069200 | 235069543 | E069 | -25388 |
| chr1 | 235069587 | 235069750 | E069 | -25181 |
| chr1 | 235104606 | 235104694 | E069 | 9675 |
| chr1 | 235104735 | 235107619 | E069 | 9804 |
| chr1 | 235107701 | 235107890 | E069 | 12770 |
| chr1 | 235107942 | 235108004 | E069 | 13011 |
| chr1 | 235108229 | 235108486 | E069 | 13298 |
| chr1 | 235108534 | 235108772 | E069 | 13603 |
| chr1 | 235112057 | 235112262 | E069 | 17126 |
| chr1 | 235112354 | 235112493 | E069 | 17423 |
| chr1 | 235112535 | 235112632 | E069 | 17604 |
| chr1 | 235112635 | 235112762 | E069 | 17704 |
| chr1 | 235113727 | 235115433 | E069 | 18796 |
| chr1 | 235115502 | 235115692 | E069 | 20571 |
| chr1 | 235115742 | 235115899 | E069 | 20811 |
| chr1 | 235115918 | 235115988 | E069 | 20987 |
| chr1 | 235115989 | 235117196 | E069 | 21058 |
| chr1 | 235117508 | 235117842 | E069 | 22577 |
| chr1 | 235122225 | 235124027 | E069 | 27294 |
| chr1 | 235132235 | 235132313 | E069 | 37304 |
| chr1 | 235132397 | 235132488 | E069 | 37466 |
| chr1 | 235132751 | 235134595 | E069 | 37820 |
| chr1 | 235090813 | 235091513 | E070 | -3418 |
| chr1 | 235091528 | 235091913 | E070 | -3018 |
| chr1 | 235092763 | 235094086 | E070 | -845 |
| chr1 | 235104735 | 235107619 | E070 | 9804 |
| chr1 | 235113727 | 235115433 | E070 | 18796 |
| chr1 | 235047831 | 235048131 | E071 | -46800 |
| chr1 | 235048301 | 235048371 | E071 | -46560 |
| chr1 | 235048446 | 235048580 | E071 | -46351 |
| chr1 | 235048659 | 235048815 | E071 | -46116 |
| chr1 | 235048857 | 235049107 | E071 | -45824 |
| chr1 | 235049184 | 235049289 | E071 | -45642 |
| chr1 | 235051697 | 235052160 | E071 | -42771 |
| chr1 | 235053373 | 235053440 | E071 | -41491 |
| chr1 | 235053528 | 235053659 | E071 | -41272 |
| chr1 | 235053680 | 235053727 | E071 | -41204 |
| chr1 | 235053879 | 235054667 | E071 | -40264 |
| chr1 | 235054696 | 235054859 | E071 | -40072 |
| chr1 | 235054870 | 235054948 | E071 | -39983 |
| chr1 | 235054997 | 235055541 | E071 | -39390 |
| chr1 | 235068178 | 235068228 | E071 | -26703 |
| chr1 | 235068458 | 235068571 | E071 | -26360 |
| chr1 | 235068744 | 235069192 | E071 | -25739 |
| chr1 | 235069200 | 235069543 | E071 | -25388 |
| chr1 | 235069587 | 235069750 | E071 | -25181 |
| chr1 | 235090271 | 235090328 | E071 | -4603 |
| chr1 | 235090411 | 235090506 | E071 | -4425 |
| chr1 | 235090615 | 235090752 | E071 | -4179 |
| chr1 | 235090813 | 235091513 | E071 | -3418 |
| chr1 | 235091528 | 235091913 | E071 | -3018 |
| chr1 | 235092763 | 235094086 | E071 | -845 |
| chr1 | 235095132 | 235096092 | E071 | 201 |
| chr1 | 235096328 | 235100545 | E071 | 1397 |
| chr1 | 235100597 | 235100704 | E071 | 5666 |
| chr1 | 235100904 | 235101094 | E071 | 5973 |
| chr1 | 235101126 | 235101199 | E071 | 6195 |
| chr1 | 235104606 | 235104694 | E071 | 9675 |
| chr1 | 235104735 | 235107619 | E071 | 9804 |
| chr1 | 235111612 | 235111653 | E071 | 16681 |
| chr1 | 235112057 | 235112262 | E071 | 17126 |
| chr1 | 235112354 | 235112493 | E071 | 17423 |
| chr1 | 235112535 | 235112632 | E071 | 17604 |
| chr1 | 235112635 | 235112762 | E071 | 17704 |
| chr1 | 235112845 | 235113018 | E071 | 17914 |
| chr1 | 235113045 | 235113175 | E071 | 18114 |
| chr1 | 235113296 | 235113394 | E071 | 18365 |
| chr1 | 235113727 | 235115433 | E071 | 18796 |
| chr1 | 235115989 | 235117196 | E071 | 21058 |
| chr1 | 235117508 | 235117842 | E071 | 22577 |
| chr1 | 235120869 | 235120919 | E071 | 25938 |
| chr1 | 235120999 | 235121066 | E071 | 26068 |
| chr1 | 235122225 | 235124027 | E071 | 27294 |
| chr1 | 235124110 | 235124150 | E071 | 29179 |
| chr1 | 235132235 | 235132313 | E071 | 37304 |
| chr1 | 235132397 | 235132488 | E071 | 37466 |
| chr1 | 235132751 | 235134595 | E071 | 37820 |
| chr1 | 235048659 | 235048815 | E072 | -46116 |
| chr1 | 235048857 | 235049107 | E072 | -45824 |
| chr1 | 235053879 | 235054667 | E072 | -40264 |
| chr1 | 235054696 | 235054859 | E072 | -40072 |
| chr1 | 235054870 | 235054948 | E072 | -39983 |
| chr1 | 235054997 | 235055541 | E072 | -39390 |
| chr1 | 235060855 | 235060947 | E072 | -33984 |
| chr1 | 235060986 | 235061036 | E072 | -33895 |
| chr1 | 235061288 | 235062920 | E072 | -32011 |
| chr1 | 235062960 | 235063189 | E072 | -31742 |
| chr1 | 235068178 | 235068228 | E072 | -26703 |
| chr1 | 235068458 | 235068571 | E072 | -26360 |
| chr1 | 235068744 | 235069192 | E072 | -25739 |
| chr1 | 235069200 | 235069543 | E072 | -25388 |
| chr1 | 235069587 | 235069750 | E072 | -25181 |
| chr1 | 235090411 | 235090506 | E072 | -4425 |
| chr1 | 235090615 | 235090752 | E072 | -4179 |
| chr1 | 235090813 | 235091513 | E072 | -3418 |
| chr1 | 235104735 | 235107619 | E072 | 9804 |
| chr1 | 235112057 | 235112262 | E072 | 17126 |
| chr1 | 235112354 | 235112493 | E072 | 17423 |
| chr1 | 235112535 | 235112632 | E072 | 17604 |
| chr1 | 235112635 | 235112762 | E072 | 17704 |
| chr1 | 235112845 | 235113018 | E072 | 17914 |
| chr1 | 235113045 | 235113175 | E072 | 18114 |
| chr1 | 235113296 | 235113394 | E072 | 18365 |
| chr1 | 235113727 | 235115433 | E072 | 18796 |
| chr1 | 235115502 | 235115692 | E072 | 20571 |
| chr1 | 235115742 | 235115899 | E072 | 20811 |
| chr1 | 235115918 | 235115988 | E072 | 20987 |
| chr1 | 235115989 | 235117196 | E072 | 21058 |
| chr1 | 235119785 | 235120515 | E072 | 24854 |
| chr1 | 235120869 | 235120919 | E072 | 25938 |
| chr1 | 235120999 | 235121066 | E072 | 26068 |
| chr1 | 235122225 | 235124027 | E072 | 27294 |
| chr1 | 235132235 | 235132313 | E072 | 37304 |
| chr1 | 235132397 | 235132488 | E072 | 37466 |
| chr1 | 235047831 | 235048131 | E073 | -46800 |
| chr1 | 235048301 | 235048371 | E073 | -46560 |
| chr1 | 235048446 | 235048580 | E073 | -46351 |
| chr1 | 235048659 | 235048815 | E073 | -46116 |
| chr1 | 235048857 | 235049107 | E073 | -45824 |
| chr1 | 235049184 | 235049289 | E073 | -45642 |
| chr1 | 235053373 | 235053440 | E073 | -41491 |
| chr1 | 235053528 | 235053659 | E073 | -41272 |
| chr1 | 235053680 | 235053727 | E073 | -41204 |
| chr1 | 235053879 | 235054667 | E073 | -40264 |
| chr1 | 235054696 | 235054859 | E073 | -40072 |
| chr1 | 235054870 | 235054948 | E073 | -39983 |
| chr1 | 235054997 | 235055541 | E073 | -39390 |
| chr1 | 235061288 | 235062920 | E073 | -32011 |
| chr1 | 235062960 | 235063189 | E073 | -31742 |
| chr1 | 235068744 | 235069192 | E073 | -25739 |
| chr1 | 235069200 | 235069543 | E073 | -25388 |
| chr1 | 235069587 | 235069750 | E073 | -25181 |
| chr1 | 235090813 | 235091513 | E073 | -3418 |
| chr1 | 235092763 | 235094086 | E073 | -845 |
| chr1 | 235104735 | 235107619 | E073 | 9804 |
| chr1 | 235113727 | 235115433 | E073 | 18796 |
| chr1 | 235115502 | 235115692 | E073 | 20571 |
| chr1 | 235115742 | 235115899 | E073 | 20811 |
| chr1 | 235115989 | 235117196 | E073 | 21058 |
| chr1 | 235119785 | 235120515 | E073 | 24854 |
| chr1 | 235120869 | 235120919 | E073 | 25938 |
| chr1 | 235120999 | 235121066 | E073 | 26068 |
| chr1 | 235122225 | 235124027 | E073 | 27294 |
| chr1 | 235132751 | 235134595 | E073 | 37820 |
| chr1 | 235047831 | 235048131 | E074 | -46800 |
| chr1 | 235048446 | 235048580 | E074 | -46351 |
| chr1 | 235048659 | 235048815 | E074 | -46116 |
| chr1 | 235048857 | 235049107 | E074 | -45824 |
| chr1 | 235049184 | 235049289 | E074 | -45642 |
| chr1 | 235049539 | 235049708 | E074 | -45223 |
| chr1 | 235053373 | 235053440 | E074 | -41491 |
| chr1 | 235053528 | 235053659 | E074 | -41272 |
| chr1 | 235053680 | 235053727 | E074 | -41204 |
| chr1 | 235053879 | 235054667 | E074 | -40264 |
| chr1 | 235054696 | 235054859 | E074 | -40072 |
| chr1 | 235054870 | 235054948 | E074 | -39983 |
| chr1 | 235054997 | 235055541 | E074 | -39390 |
| chr1 | 235055943 | 235056026 | E074 | -38905 |
| chr1 | 235056985 | 235057826 | E074 | -37105 |
| chr1 | 235061288 | 235062920 | E074 | -32011 |
| chr1 | 235062960 | 235063189 | E074 | -31742 |
| chr1 | 235068458 | 235068571 | E074 | -26360 |
| chr1 | 235068744 | 235069192 | E074 | -25739 |
| chr1 | 235069200 | 235069543 | E074 | -25388 |
| chr1 | 235069587 | 235069750 | E074 | -25181 |
| chr1 | 235090411 | 235090506 | E074 | -4425 |
| chr1 | 235090615 | 235090752 | E074 | -4179 |
| chr1 | 235090813 | 235091513 | E074 | -3418 |
| chr1 | 235100597 | 235100704 | E074 | 5666 |
| chr1 | 235104606 | 235104694 | E074 | 9675 |
| chr1 | 235104735 | 235107619 | E074 | 9804 |
| chr1 | 235112057 | 235112262 | E074 | 17126 |
| chr1 | 235112354 | 235112493 | E074 | 17423 |
| chr1 | 235112535 | 235112632 | E074 | 17604 |
| chr1 | 235112635 | 235112762 | E074 | 17704 |
| chr1 | 235112845 | 235113018 | E074 | 17914 |
| chr1 | 235113045 | 235113175 | E074 | 18114 |
| chr1 | 235113296 | 235113394 | E074 | 18365 |
| chr1 | 235113727 | 235115433 | E074 | 18796 |
| chr1 | 235115502 | 235115692 | E074 | 20571 |
| chr1 | 235115742 | 235115899 | E074 | 20811 |
| chr1 | 235115918 | 235115988 | E074 | 20987 |
| chr1 | 235115989 | 235117196 | E074 | 21058 |
| chr1 | 235119785 | 235120515 | E074 | 24854 |
| chr1 | 235120869 | 235120919 | E074 | 25938 |
| chr1 | 235120999 | 235121066 | E074 | 26068 |
| chr1 | 235122225 | 235124027 | E074 | 27294 |
| chr1 | 235132235 | 235132313 | E074 | 37304 |
| chr1 | 235132397 | 235132488 | E074 | 37466 |
| chr1 | 235132751 | 235134595 | E074 | 37820 |
| chr1 | 235051352 | 235051435 | E081 | -43496 |
| chr1 | 235051697 | 235052160 | E081 | -42771 |
| chr1 | 235053879 | 235054667 | E081 | -40264 |
| chr1 | 235054696 | 235054859 | E081 | -40072 |
| chr1 | 235054870 | 235054948 | E081 | -39983 |
| chr1 | 235054997 | 235055541 | E081 | -39390 |
| chr1 | 235068744 | 235069192 | E081 | -25739 |
| chr1 | 235069200 | 235069543 | E081 | -25388 |
| chr1 | 235069587 | 235069750 | E081 | -25181 |
| chr1 | 235092763 | 235094086 | E081 | -845 |
| chr1 | 235104735 | 235107619 | E081 | 9804 |
| chr1 | 235051697 | 235052160 | E082 | -42771 |
| chr1 | 235068744 | 235069192 | E082 | -25739 |