rs2802928

Homo sapiens
A>G
LOC101927851 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A==0291 (8742/29946,GnomAD)
A==0259 (7540/29116,TOPMED)
A==0160 (803/5008,1000G)
A==0372 (1435/3854,ALSPAC)
A==0361 (1340/3708,TWINSUK)
chr1:234959184 (GRCh38.p7) (1q42.3)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 1NC_000001.11:g.234959184A>G
GRCh37.p13 chr 1NC_000001.10:g.235094931A>G

Gene: LOC101927851, uncharacterized LOC101927851(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC101927851 transcriptNR_125945.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.140G=0.860
1000GenomesAmericanSub694A=0.170G=0.830
1000GenomesEast AsianSub1008A=0.002G=0.998
1000GenomesEuropeSub1006A=0.354G=0.646
1000GenomesGlobalStudy-wide5008A=0.160G=0.840
1000GenomesSouth AsianSub978A=0.140G=0.860
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.372G=0.628
The Genome Aggregation DatabaseAfricanSub8722A=0.176G=0.824
The Genome Aggregation DatabaseAmericanSub834A=0.190G=0.810
The Genome Aggregation DatabaseEast AsianSub1620A=0.002G=0.998
The Genome Aggregation DatabaseEuropeSub18468A=0.376G=0.623
The Genome Aggregation DatabaseGlobalStudy-wide29946A=0.291G=0.708
The Genome Aggregation DatabaseOtherSub302A=0.300G=0.700
Trans-Omics for Precision MedicineGlobalStudy-wide29116A=0.259G=0.741
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.361G=0.639
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs28029280.00049alcohol dependence20201924

eQTL of rs2802928 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2802928 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr1235054696235054859E067-40072
chr1235054870235054948E067-39983
chr1235054997235055541E067-39390
chr1235061288235062920E067-32011
chr1235062960235063189E067-31742
chr1235068178235068228E067-26703
chr1235068458235068571E067-26360
chr1235068744235069192E067-25739
chr1235069200235069543E067-25388
chr1235069587235069750E067-25181
chr1235089864235089969E067-4962
chr1235104735235107619E0679804
chr1235112354235112493E06717423
chr1235112535235112632E06717604
chr1235112635235112762E06717704
chr1235113727235115433E06718796
chr1235115502235115692E06720571
chr1235115742235115899E06720811
chr1235115918235115988E06720987
chr1235115989235117196E06721058
chr1235117508235117842E06722577
chr1235120869235120919E06725938
chr1235120999235121066E06726068
chr1235122225235124027E06727294
chr1235132235235132313E06737304
chr1235132397235132488E06737466
chr1235132751235134595E06737820
chr1235047831235048131E068-46800
chr1235048301235048371E068-46560
chr1235048446235048580E068-46351
chr1235048659235048815E068-46116
chr1235048857235049107E068-45824
chr1235054696235054859E068-40072
chr1235054870235054948E068-39983
chr1235054997235055541E068-39390
chr1235061288235062920E068-32011
chr1235062960235063189E068-31742
chr1235068458235068571E068-26360
chr1235068744235069192E068-25739
chr1235069200235069543E068-25388
chr1235069587235069750E068-25181
chr1235090027235090083E068-4848
chr1235090271235090328E068-4603
chr1235090411235090506E068-4425
chr1235090615235090752E068-4179
chr1235090813235091513E068-3418
chr1235095132235096092E068201
chr1235104606235104694E0689675
chr1235104735235107619E0689804
chr1235107701235107890E06812770
chr1235107942235108004E06813011
chr1235111612235111653E06816681
chr1235112057235112262E06817126
chr1235112354235112493E06817423
chr1235112535235112632E06817604
chr1235112635235112762E06817704
chr1235113727235115433E06818796
chr1235115742235115899E06820811
chr1235115918235115988E06820987
chr1235115989235117196E06821058
chr1235119785235120515E06824854
chr1235120869235120919E06825938
chr1235120999235121066E06826068
chr1235122225235124027E06827294
chr1235132235235132313E06837304
chr1235132397235132488E06837466
chr1235132751235134595E06837820
chr1235054696235054859E069-40072
chr1235054870235054948E069-39983
chr1235054997235055541E069-39390
chr1235061288235062920E069-32011
chr1235062960235063189E069-31742
chr1235068178235068228E069-26703
chr1235068458235068571E069-26360
chr1235068744235069192E069-25739
chr1235069200235069543E069-25388
chr1235069587235069750E069-25181
chr1235104606235104694E0699675
chr1235104735235107619E0699804
chr1235107701235107890E06912770
chr1235107942235108004E06913011
chr1235108229235108486E06913298
chr1235108534235108772E06913603
chr1235112057235112262E06917126
chr1235112354235112493E06917423
chr1235112535235112632E06917604
chr1235112635235112762E06917704
chr1235113727235115433E06918796
chr1235115502235115692E06920571
chr1235115742235115899E06920811
chr1235115918235115988E06920987
chr1235115989235117196E06921058
chr1235117508235117842E06922577
chr1235122225235124027E06927294
chr1235132235235132313E06937304
chr1235132397235132488E06937466
chr1235132751235134595E06937820
chr1235090813235091513E070-3418
chr1235091528235091913E070-3018
chr1235092763235094086E070-845
chr1235104735235107619E0709804
chr1235113727235115433E07018796
chr1235047831235048131E071-46800
chr1235048301235048371E071-46560
chr1235048446235048580E071-46351
chr1235048659235048815E071-46116
chr1235048857235049107E071-45824
chr1235049184235049289E071-45642
chr1235051697235052160E071-42771
chr1235053373235053440E071-41491
chr1235053528235053659E071-41272
chr1235053680235053727E071-41204
chr1235053879235054667E071-40264
chr1235054696235054859E071-40072
chr1235054870235054948E071-39983
chr1235054997235055541E071-39390
chr1235068178235068228E071-26703
chr1235068458235068571E071-26360
chr1235068744235069192E071-25739
chr1235069200235069543E071-25388
chr1235069587235069750E071-25181
chr1235090271235090328E071-4603
chr1235090411235090506E071-4425
chr1235090615235090752E071-4179
chr1235090813235091513E071-3418
chr1235091528235091913E071-3018
chr1235092763235094086E071-845
chr1235095132235096092E071201
chr1235096328235100545E0711397
chr1235100597235100704E0715666
chr1235100904235101094E0715973
chr1235101126235101199E0716195
chr1235104606235104694E0719675
chr1235104735235107619E0719804
chr1235111612235111653E07116681
chr1235112057235112262E07117126
chr1235112354235112493E07117423
chr1235112535235112632E07117604
chr1235112635235112762E07117704
chr1235112845235113018E07117914
chr1235113045235113175E07118114
chr1235113296235113394E07118365
chr1235113727235115433E07118796
chr1235115989235117196E07121058
chr1235117508235117842E07122577
chr1235120869235120919E07125938
chr1235120999235121066E07126068
chr1235122225235124027E07127294
chr1235124110235124150E07129179
chr1235132235235132313E07137304
chr1235132397235132488E07137466
chr1235132751235134595E07137820
chr1235048659235048815E072-46116
chr1235048857235049107E072-45824
chr1235053879235054667E072-40264
chr1235054696235054859E072-40072
chr1235054870235054948E072-39983
chr1235054997235055541E072-39390
chr1235060855235060947E072-33984
chr1235060986235061036E072-33895
chr1235061288235062920E072-32011
chr1235062960235063189E072-31742
chr1235068178235068228E072-26703
chr1235068458235068571E072-26360
chr1235068744235069192E072-25739
chr1235069200235069543E072-25388
chr1235069587235069750E072-25181
chr1235090411235090506E072-4425
chr1235090615235090752E072-4179
chr1235090813235091513E072-3418
chr1235104735235107619E0729804
chr1235112057235112262E07217126
chr1235112354235112493E07217423
chr1235112535235112632E07217604
chr1235112635235112762E07217704
chr1235112845235113018E07217914
chr1235113045235113175E07218114
chr1235113296235113394E07218365
chr1235113727235115433E07218796
chr1235115502235115692E07220571
chr1235115742235115899E07220811
chr1235115918235115988E07220987
chr1235115989235117196E07221058
chr1235119785235120515E07224854
chr1235120869235120919E07225938
chr1235120999235121066E07226068
chr1235122225235124027E07227294
chr1235132235235132313E07237304
chr1235132397235132488E07237466
chr1235047831235048131E073-46800
chr1235048301235048371E073-46560
chr1235048446235048580E073-46351
chr1235048659235048815E073-46116
chr1235048857235049107E073-45824
chr1235049184235049289E073-45642
chr1235053373235053440E073-41491
chr1235053528235053659E073-41272
chr1235053680235053727E073-41204
chr1235053879235054667E073-40264
chr1235054696235054859E073-40072
chr1235054870235054948E073-39983
chr1235054997235055541E073-39390
chr1235061288235062920E073-32011
chr1235062960235063189E073-31742
chr1235068744235069192E073-25739
chr1235069200235069543E073-25388
chr1235069587235069750E073-25181
chr1235090813235091513E073-3418
chr1235092763235094086E073-845
chr1235104735235107619E0739804
chr1235113727235115433E07318796
chr1235115502235115692E07320571
chr1235115742235115899E07320811
chr1235115989235117196E07321058
chr1235119785235120515E07324854
chr1235120869235120919E07325938
chr1235120999235121066E07326068
chr1235122225235124027E07327294
chr1235132751235134595E07337820
chr1235047831235048131E074-46800
chr1235048446235048580E074-46351
chr1235048659235048815E074-46116
chr1235048857235049107E074-45824
chr1235049184235049289E074-45642
chr1235049539235049708E074-45223
chr1235053373235053440E074-41491
chr1235053528235053659E074-41272
chr1235053680235053727E074-41204
chr1235053879235054667E074-40264
chr1235054696235054859E074-40072
chr1235054870235054948E074-39983
chr1235054997235055541E074-39390
chr1235055943235056026E074-38905
chr1235056985235057826E074-37105
chr1235061288235062920E074-32011
chr1235062960235063189E074-31742
chr1235068458235068571E074-26360
chr1235068744235069192E074-25739
chr1235069200235069543E074-25388
chr1235069587235069750E074-25181
chr1235090411235090506E074-4425
chr1235090615235090752E074-4179
chr1235090813235091513E074-3418
chr1235100597235100704E0745666
chr1235104606235104694E0749675
chr1235104735235107619E0749804
chr1235112057235112262E07417126
chr1235112354235112493E07417423
chr1235112535235112632E07417604
chr1235112635235112762E07417704
chr1235112845235113018E07417914
chr1235113045235113175E07418114
chr1235113296235113394E07418365
chr1235113727235115433E07418796
chr1235115502235115692E07420571
chr1235115742235115899E07420811
chr1235115918235115988E07420987
chr1235115989235117196E07421058
chr1235119785235120515E07424854
chr1235120869235120919E07425938
chr1235120999235121066E07426068
chr1235122225235124027E07427294
chr1235132235235132313E07437304
chr1235132397235132488E07437466
chr1235132751235134595E07437820
chr1235051352235051435E081-43496
chr1235051697235052160E081-42771
chr1235053879235054667E081-40264
chr1235054696235054859E081-40072
chr1235054870235054948E081-39983
chr1235054997235055541E081-39390
chr1235068744235069192E081-25739
chr1235069200235069543E081-25388
chr1235069587235069750E081-25181
chr1235092763235094086E081-845
chr1235104735235107619E0819804
chr1235051697235052160E082-42771
chr1235068744235069192E082-25739