| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 21 | NC_000021.9:g.14332596A>G |
| GRCh37.p13 chr 21 | NC_000021.8:g.15704917A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.686 | G=0.314 |
| 1000Genomes | American | Sub | 694 | A=0.910 | G=0.090 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.780 | G=0.220 |
| 1000Genomes | Europe | Sub | 1006 | A=0.864 | G=0.136 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.799 | G=0.201 |
| 1000Genomes | South Asian | Sub | 978 | A=0.830 | G=0.170 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.882 | G=0.118 |
| The Genome Aggregation Database | African | Sub | 8686 | A=0.727 | G=0.273 |
| The Genome Aggregation Database | American | Sub | 836 | A=0.890 | G=0.110 |
| The Genome Aggregation Database | East Asian | Sub | 1616 | A=0.765 | G=0.235 |
| The Genome Aggregation Database | Europe | Sub | 18410 | A=0.863 | G=0.137 |
| The Genome Aggregation Database | Global | Study-wide | 29844 | A=0.818 | G=0.181 |
| The Genome Aggregation Database | Other | Sub | 296 | A=0.820 | G=0.180 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.806 | G=0.194 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.866 | G=0.134 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs2822573 | 0.00099 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr21 | 15753264 | 15753417 | E069 | 48347 |
| chr21 | 15753584 | 15753659 | E069 | 48667 |
| chr21 | 15753264 | 15753417 | E071 | 48347 |
| chr21 | 15753584 | 15753659 | E071 | 48667 |
| chr21 | 15753264 | 15753417 | E072 | 48347 |
| chr21 | 15753264 | 15753417 | E074 | 48347 |
| chr21 | 15753584 | 15753659 | E074 | 48667 |