SNP Detail Info-rs2829538

Organism: Homo sapiens

Alleles: T>C

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C=0352 (10549/29912,GnomAD)
C=0348 (10157/29118,TOPMED)
C=0395 (1979/5008,1000G)
C=0352 (1356/3854,ALSPAC)
C=0345 (1281/3708,TWINSUK)

Position: chr21:25090761 (GRCh38.p7) (21q21.2)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 21	NC_000021.9:g.25090761T>C
GRCh37.p13 chr 21	NC_000021.8:g.26463074T>C

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.719	C=0.281
1000Genomes	American	Sub	694	T=0.590	C=0.410
1000Genomes	East Asian	Sub	1008	T=0.377	C=0.623
1000Genomes	Europe	Sub	1006	T=0.673	C=0.327
1000Genomes	Global	Study-wide	5008	T=0.605	C=0.395
1000Genomes	South Asian	Sub	978	T=0.620	C=0.380
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.648	C=0.352
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.651	C=0.348
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.655	C=0.345

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs2829538	0.0002	alcohol dependence(early age of onset)	20201924
rs2829538	0.00048	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs2829538