SNP Detail Info-rs2829735

Organism: Homo sapiens

Alleles: C>A

Gene : Feature

LINC00158 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0394 (11495/29118,TOPMED)
C==0470 (1812/3854,ALSPAC)
C==0453 (1678/3708,TWINSUK)

Position: chr21:25413995 (GRCh38.p7) (21q21.2)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 21	NC_000021.9:g.25413995C>A
GRCh37.p13 chr 21	NC_000021.8:g.26786307C>A

Molecule type	Change	Amino acid[Codon]	SO Term
LINC00158 transcript	NR_024027.2:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.470	A=0.530
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.605	A=0.394
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.453	A=0.547

PMID	Title	Author	Journal
22488850	Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.	Zuo L	Am J Med Genet B Neuropsychiatr Genet

SNP ID	p-value	Traits	Study
rs2829735	2.5E-07	alcohol and nictotine co-dependence	22488850

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs2829735